Array 1 58310-62486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOC010000006.1 Klebsiella pneumoniae strain UEB_20 NODE_6_length_234277_cov_59.707722, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58310 29 100.0 32 ............................. TATGGGACGTTGCCCACGTTCACCCGCCAGTG 58371 29 100.0 32 ............................. GCCAGTAGGCCGAAGCTGAACGGGGGAAAATC 58432 29 100.0 32 ............................. ATCTGCGGGCAGAGTACGAGCGGCTCAGCCGA 58493 29 100.0 32 ............................. ATTTTATTCCGAGCGCAGCATATTTCGTCCGC 58554 29 100.0 32 ............................. AAATTGCAGAAAAAATCAATGGGTTGACAAAT 58615 29 100.0 32 ............................. AATGATATCACCGAACTGGCGCAGAGAGAGAA 58676 29 100.0 32 ............................. CAAACTCTGTCCGACCGCCTCAAAAATAAACG 58737 29 100.0 32 ............................. TTGTCCGCCCGCCAGCGCTCAATAGGGGCTAC 58798 29 100.0 32 ............................. GCTATTGGCGTTACACGGAAGAACAACACGAG 58859 29 100.0 32 ............................. GCAACAGCGCACTGTTGAAATCGCTGCAGGAC 58920 29 100.0 32 ............................. CGCGTGCGCTGGTGCCTTGAAATTTTTGCAGC 58981 29 100.0 32 ............................. GACTGCTGGCGCTCACCACCGGAGATATTCGA 59042 29 100.0 32 ............................. GCGTGTCGCCGTTCGGGCGGGCGTTTAGCACC 59103 29 100.0 32 ............................. TGCTTTGCCCCTTCGTGGCCGTTACCGACACT 59164 29 100.0 32 ............................. TTTGCTTCGGTTAATCAGTCGCATATTCACCT 59225 29 100.0 32 ............................. ATCTTCTTCGTCTCGGAATTCTAAAGAATCCC 59286 29 100.0 32 ............................. GGGTGGGGATAACTGCGGTCGATGAGCTATTC 59347 29 100.0 32 ............................. GTGCAGGCACGAAAAAAGCCGACGAACTGCAG 59408 29 100.0 32 ............................. TGTTTTTTGTCAAATGATGAACTGTTTTTTAT 59469 29 100.0 32 ............................. ATATTCCCGGCGCCGGTGACATTCCGCGTGAC 59530 29 100.0 32 ............................. TTCGCCTTTCTGTCTGCAGAGGCGCGGACAGG 59591 29 100.0 32 ............................. TAGCTGGCCGTTTCAGTTGCGCGTGCGTCTGG 59652 29 100.0 32 ............................. CGCATCGCCGAGCTGGAGTCCCGCACCGTCAC 59713 29 100.0 32 ............................. GTTCATCTCTGACCTTGAGGATGAATCCCATC 59774 29 100.0 32 ............................. TGGTCGAGATCATCAGTAGGCCACTCACCATA 59835 29 100.0 32 ............................. GTGCCGAGTCGCCCGACACCGGCGATCATGCC 59896 29 100.0 32 ............................. GTAGTACGGGTAATCGTCATTGCCGCCGTACA 59957 29 100.0 32 ............................. CCTAAAGACAAACCATACCGCATGCTCGACAG 60018 29 100.0 32 ............................. TATGTATGCCCAGTAACTTTTACATTCTGAGT 60079 29 100.0 32 ............................. ATGGTCTGCGGCCGCATGGTACCGAAGAAAAA 60140 29 100.0 32 ............................. CGGGCCAGCGCTTCAGCTTCTTCTGCTGGGAG 60201 29 100.0 32 ............................. AACCCCTGATTTCCCCAGAGTCGGCAGTTTCT 60262 29 100.0 32 ............................. TCTGGTCTGATGGCGTTTATAACTACAGCCAG 60323 29 100.0 32 ............................. CGAAAGAGGCGGTAACAAAAAAACTATCACAG 60384 29 100.0 32 ............................. AGGTTAGTTGCCCATCGTACATTTTGATTACC 60445 29 100.0 32 ............................. GATTCCGGTCACTCCTGGTCAGCAGCTGGTGT 60506 29 100.0 32 ............................. CCTAAACACCAGGATTTTCTTTACGCCGAACG 60567 29 100.0 32 ............................. TCCCGGACGTAATCCGTTATTGGGCGAACGTC 60628 29 100.0 33 ............................. GGAGCCCGTATTGATTGCGTCCTATCACCAGGC 60690 29 100.0 32 ............................. ACTGATATCTACTACCCGCATGACAGTCTTCC 60751 29 100.0 32 ............................. GCCTTGCACCATCTGATCCATGGCGCCGATGT 60812 29 100.0 32 ............................. CGTCTGCAATGATCGCAGTAGAGCCGGGGAAA 60873 29 100.0 32 ............................. CGAACCCCGCCGCCGCAGCCAGCGCGGCCATA 60934 29 100.0 32 ............................. CGGGAACAAAACCACCACGGCGAGGTACATCT 60995 29 100.0 32 ............................. GGTCGTAAAGGTGACCAGGGTGACCCCGGCCC 61056 29 100.0 32 ............................. GGATGGTAAGAGTGAAAAAACAACAGAAAAAG 61117 29 100.0 32 ............................. ATTTGAAAGATACGTTTCGGGATAGATGGAAT 61178 29 100.0 32 ............................. CCTACCGCCCTGACGTTCTGTTTCGCCAGGTT 61239 29 100.0 32 ............................. CGACGGCAGAGTGTCGTTTTATCACCGCGGGA 61300 29 93.1 32 ...C........................T GATGGACCTTAGCAATCTCCAGCAGGCCAGTC 61361 29 100.0 32 ............................. CGTCACAACGCCGGCGACAGTAACATCGTCCA 61422 29 100.0 32 ............................. AATCGGATGTTCATAATATCCAGCCCATTCCT 61483 29 100.0 31 ............................. CCGGCCCGTTCCAGTCGTCCCTGGCAAACGA 61543 29 100.0 32 ............................. AACGGAGTTTACAACCCAGGCGCCCTGATGAT 61604 29 100.0 32 ............................. CAAATCCTGGTGTCGTCAGCACAGACCTGACT 61665 29 100.0 32 ............................. GAGCAGTAACTGCCGTTAATGTCCTCACCGGG 61726 29 100.0 32 ............................. GCTCGGCGTAGTGCGTGCCGTTAAAGCCGATT 61787 29 100.0 32 ............................. TCTATTTTTGTTCTGGCCAGCGCGCCGGTGAA 61848 29 100.0 32 ............................. TGTATTGCTACCCGCACTAAAAAGGCGGCATA 61909 29 100.0 32 ............................. AGAACGGGATACCCTACATCTTTGATGCCTAT 61970 29 100.0 32 ............................. GGACGAGCTTTTCCGCCGCGCTGATAAAGTCC 62031 29 100.0 32 ............................. TTCGAGTTACGGGTGAGTGGAAAAAACGTAAT 62092 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 62153 29 100.0 32 ............................. GTTCTCTGCGCTGGCCTTGTCCGGTGCATCCT 62214 29 100.0 32 ............................. GTGATGGCGAAATCGATGGCGAACTGTTGGTA 62275 29 100.0 32 ............................. GCGTAACGGGACGCGGAACCGACAGGAAGCCC 62336 29 100.0 32 ............................. CAATCAACAGGTGCGGAACCGGTTCAAGAATA 62397 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 62458 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 259930-258193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOC010000004.1 Klebsiella pneumoniae strain UEB_20 NODE_4_length_283791_cov_46.301039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 259929 28 100.0 33 ............................ CGTTTAGTTTTTTGATGGAGGGCGGCGTTGTTC 259868 28 100.0 33 ............................ TTGCGTGCCTTGCGTTAATACAGACATGTTTTG 259807 28 100.0 33 ............................ TGAGTGCATATTATGTTTATCGGACCCGGCGGG 259746 28 100.0 33 ............................ CGATGTCCAGGTCGGCGTCCGGATGAAAGGCCA 259685 28 100.0 33 ............................ CGGGGATCGTTATGTCTTCTCTTTCTGGTTAGA 259624 28 100.0 33 ............................ TCCGCCTCTTGCTTCCGACCTGGTAAAAGCGAT 259563 28 100.0 33 ............................ CCGGATTCGATGAAATTTCCGGTAACTCAATGA 259502 28 100.0 33 ............................ TTTCACGCTGCCGCTGATGGCGTGGCTGTGGGT 259441 28 100.0 33 ............................ CGGATCCCACGCGGGCTGTATTCTCTACATCGG 259380 28 100.0 33 ............................ CTTCACTTCCTCGGCACGTCAGCCGCGACAGCG 259319 28 100.0 33 ............................ CAGGTCGATATGCAGAGAAAGGTTGCATGGGTA 259258 28 100.0 33 ............................ CATCATTGCCCGCGCGGCCCTCAGGCACGAGGG 259197 28 100.0 33 ............................ CAGCACAGTGGGAAAGCGACATTCCGTTAATTA 259136 28 100.0 33 ............................ CAACCAACCGACGACGGACCTCAACGCCGCGCA 259075 28 100.0 33 ............................ CGCAACTTTAGCGGCGCTGTATTCTGCGTCGGT 259014 28 100.0 33 ............................ TACCGGATCAAGTTCTGGCAGGTCGATGACGAC 258953 28 100.0 33 ............................ CGAGGGTTTGAGCGAAAGAGCGGAGCTTTTTAC 258892 28 100.0 33 ............................ CCCCCAATAAGGCAGCTGATTTCTTCGGCGTTT 258831 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 258770 28 100.0 33 ............................ TATGCTTTCTGCTGCTACTGACGCAATTGATCC 258709 28 100.0 33 ............................ CAGCCGATACCCCGGCGGCGTCCGCGTCCTTGC 258648 28 100.0 34 ............................ CAAAACGGCGTCATTGAGGTTGATTGCGGCTGTG G [258631] 258585 28 100.0 33 ............................ TGGATCGTCGGCAGCTCACTGCTGGATATTGCG 258524 28 100.0 33 ............................ CAATTACCGCGACTGCGGGAATGCTCTGAAGAT 258463 28 100.0 33 ............................ CAGGCCTGACGGCTCTTTCGGCAGGGCGTCGAT 258402 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 258341 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 258280 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 258219 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGGCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACTGGCTACAAATTGGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269382-268683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKOC010000004.1 Klebsiella pneumoniae strain UEB_20 NODE_4_length_283791_cov_46.301039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 269381 28 96.4 33 ..........T................. CTGCGTTAATACCGCCGTTTGTCTGATTCAGAT 269320 28 96.4 33 ..........T................. TTGATAGGATTGATGAAGGAAAAAACCAAAAGA 269259 28 96.4 33 ..........T................. CCTCTGCAGGCTATCGACGTCTCTAAAAACGTT 269198 28 100.0 33 ............................ CTGGTCAAGTTGGTTTCCTGGCGTGGCAGCGTT 269137 28 100.0 33 ............................ TATTTATTATCAGGATATGCCTGTGTGGGGGGC 269076 28 100.0 33 ............................ TCCAGCGAACAATGGCGGTGGATATGGCGGCGG 269015 28 100.0 33 ............................ CCGATATCCGCGAAAACGGGCTTGACGTGGTAC 268954 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 268893 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 268832 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 268771 28 92.9 33 ..............T........A.... TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 268710 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.6 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTATGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCATATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //