Array 1 217609-214040 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPY01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_39_S118 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 217608 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 217547 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 217486 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 217425 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 217364 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 217303 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 217242 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 217181 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 217120 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 217059 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 216998 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 216937 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 216876 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 216815 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 216754 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 216693 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 216632 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 216571 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 216510 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 216449 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 216388 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 216327 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 216266 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 216205 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 216144 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 216083 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 216022 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 215961 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 215900 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 215839 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 215778 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 215717 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 215656 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 215595 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 215534 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 215473 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 215412 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 215351 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 215290 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 215229 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 215168 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 215107 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 215046 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 214985 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 214924 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 214863 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 214802 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 214741 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 214680 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 214619 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 214558 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 214497 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 214436 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 214375 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 214314 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 214253 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 214192 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 214131 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 214069 29 96.6 0 ............T................ | A [214042] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235403-234155 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPY01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_39_S118 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235402 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 235341 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 235280 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 235219 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 235158 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 235097 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 235036 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 234975 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 234914 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 234853 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 234792 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 234731 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 234670 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234609 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234548 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 234487 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 234426 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 234365 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 234304 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 234243 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 234182 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //