Array 1 70604-71421 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGB01000006.1 Ruminococcus sp. AF21-42 AF21-42.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 70604 36 100.0 30 .................................... TGAAACATACTTCATGTATGTGATAAAATA 70670 36 100.0 30 .................................... AACGAAAGTCGTCTATTGCAACGCCCTTGA 70736 36 100.0 30 .................................... AACAGAACCCGTTGAGTGTGATAATCCATA 70802 36 100.0 30 .................................... AATGTCCATCATGTTTGTGTTCCTCCATGA 70868 36 100.0 30 .................................... TACATAGGATCCATCAAGCCAAACCTCACC 70934 36 100.0 30 .................................... CGCCCTTGTGGTGGTCATGCAGTTTGTTGA 71000 36 100.0 30 .................................... TACCTGAGTGGTGGGTGCTTTTTTCATGCT 71066 36 100.0 30 .................................... GAAGCTTCAGGATCCGCTTCCTGAATCGTT 71132 36 100.0 30 .................................... TTGTGCTGGGAGGAAAACGCAGATGCCGTA 71198 36 100.0 30 .................................... TGGTATACTGGTGCAATCGTTGCCAGACCG 71264 36 97.2 84 ...............................T.... TAAAAAGTTGAAACGCTCCACACCCCCTTTGTTTGAGAATGATGTAAATAAAAAATATTTTCGATGAAATTTATCGGGAGTGAT 71384 36 77.8 0 A..................G.......A.A.TT.TA | AA [71409] ========== ====== ====== ====== ==================================== ==================================================================================== ================== 12 36 97.9 35 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AATTATAAATAAACTGTATTCAGAATTGGTTAAGGTATCCGCATCAGAAGTGATGTATGAAAGGACAGCAGAACTTACCAGATATATATCAGATTATATTATGGATTTGGAAGACAGTGCAAATTATGCAGTTCAATTTTCTGATCGCTTGGATATAGCTGGTCTATTAAAAGCTATGGATGTAAAATATGAGGAAATTGAAGAATCATTGTTAGAACATCTGATAAGATATATAAAACTTGTTGTGGAATTATTAGGAGTGAAGCTTATTATATTTGTGAATCTCAGAAGCTATTTAAGTGACCGACAATTTAGGGGGTTAATACAGGAAATAAAATATCAGGAAATTAAAGCGTTATTTATTGAAAATCAAGAAAGGCCTTGTATAGAAGGGGGAATGCGATATATTATAGATAAAGATGGATGTGAAATTTATTAATAGTGGTTTGAGTACCTTATTTTGCATATGCAAGTGATGGCATATTATTTTTGAATTTGAG # Right flank : AGAAACAATAATTAGACCAGAAAAGAAAGTGGAGGACAGTAAAATGAAGTTAGGTATTTTGGGGGCCGGAGGCATTGCTTCTACTATGGCGAAAACAGTGGCAGGAATGAAAGATGTGGAGGCGTATGCGGTTGCTGCCCGTGATCTGGAACGTGCCCGGGTATTTGCACAGAAATATGAAGTAAAAAAAGCATATGGATCCTATGAGGAAATGCTGGCAGATGATGAGGTTGAACTGGTTTATATCGCAACTCCTCATTCACACCATTATCTGCATGCAAAGATGTGTCTGGAAGCGGGAAAGCATGTGCTTTGTGAAAAGGCATTTACTGTAAATGCAGAGCAGGCACAAAAATTATTTGATCTTGCAAAAGAGAAAAAGCTTCTGATTACAGAAGCAATCTGGACGAGATATATGCCGTCCAGAAAGATGATCAACGACATTATTGAAAGTGGTGTGATCGGTGAAGTCACCGCAGTTACGGCGAATCTCAGTTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 80832-79818 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGB01000014.1 Ruminococcus sp. AF21-42 AF21-42.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 80831 30 100.0 37 .............................. CAAAAGAATCCCCAGATTTTACCCTGACCGGAAAACG 80764 30 100.0 36 .............................. TGTATTCAAAATGTCTTAAATTATGGTCCTTTAAAT 80698 30 100.0 35 .............................. AGAGGATTTGAGTTTGAAATTACAATTCCAAATCT 80633 30 100.0 35 .............................. TAGAGTTAAGGCTAAAAGGATTAAAACTCTTTTCC 80568 30 100.0 37 .............................. GCGCTCGCTCCAATCTGCTGAGGCGTGGCGTAAGAAA 80501 30 100.0 35 .............................. ACCCTTAAAATAAAAATATGAATATAGGCAAGCGG 80436 30 100.0 36 .............................. ATTGAAGACGGGAACATTTTTCCGTGAGAAATAGCT 80370 30 100.0 34 .............................. CCTTAATCAAGGAGGTGAGCCATCTTGCGTGCCA 80306 30 100.0 35 .............................. TTGTCTCTGACAGTCCGGCTGAGGTCATGGCGTTC 80241 30 100.0 36 .............................. CATATCCTTGTGCCTTGTGTCTCCGTCGTACCATCT 80175 30 100.0 35 .............................. AGTGAAGTTAAAACACCCGGCATATCTCCGGTTGT 80110 30 100.0 35 .............................. CTATACAGGTTGGTAGAAGAAACATTACCGCTTCC 80045 30 100.0 37 .............................. TGACAATGTGGTGATGGAACCTTCCCTTGCTTCCGCA 79978 30 100.0 35 .............................. TCATCAATTTTGGTATTAATTACTTTTGCCATTTA 79913 30 100.0 36 .............................. ACGGATTTAAACAAAAATACCTGTCATGGATATTTT 79847 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 100.0 36 GTATTAATAGAAACATTGTGGAATGTAAAG # Left flank : GAAAAGGAATATGAAGGATTCAGAATATGGTGGTGAAATGAAAGATGTATGTAGTATTGGTATATGACGTAAGTCAGGAAGAAAATGGAGCAAGACGTTGGTCAAGAATTTTTAAAATATGTAAAAAATATCTGACACACATACAAAATTCGGTATTTGAGGGTGAATTATCAAAAGCACAATTAGCACAATTGCAAAAAGAGCTGAATGAATATATAGACAAAGAATTAGATTCCGTAATCATCTTCAAATCTCGTCAGGAAAAGTGGCTGGATAAAGAATTTTGGGGACGAAAGGATGATCTGACAAGCTTTATATTATGATTGTCGATGTCCAATATAGCTAAAAGTCCAGGAGGTCGACAATGTTTGATTTATCAATAAAAAGCTTTACAAGAGGACCTTTTTCGATTTTTATGAAGTAAAAAAATCAATAAGATGACAAAGTCGACAGAAAGTGATAGAATGATAATTGTATTATAAGGCAACAGAGAGTACGGG # Right flank : TATTATATTGTATTGTGCAAAAAAAATGAAATGAAGAAAACGAGATTATTTTCTTCGATAATGAATGAAAATAATCTCGTTTTACAGGTGTAATTTACAAATTTGGGGAGTCCCTGAAATCTTTCCGGAACAGTAATGCAGCTCCGGCAATAAATATAAAGCAGACCACCCATGTAACCGGTTCACAGACACATACCGCCAGATATCCTTTTACAGGTACGATCCAGAATGCAAAGATAACTTTACCGATCAGTTCCAGATCACTGCACAGCAATGGAGAGAGTTGATGAAGCATTCCCTGGAGAGCATTTCGCATGATCACAAGAAATGCCATAGGAGGGAACATGGCAGTGCTGATACGGACATAGAGAAGTGCATTGTCAATAACTGTTGGGTTGTTACTTCCTGTGATCTGCCGTACTGCGTAAGGTGCCACAAAGACTGAGAAAGTTACTGCGATCAGCCACCAGATAAGATAAAGTCCAAATGCAACTTTGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAAACATTGTGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //