Array 1 93644-94692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENBX010000001.1 Staphylococcus pseudintermedius strain HSP143 contig_2_segment0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 93644 36 100.0 35 .................................... TTGCCCAACCCGTTTTTAAGTTTCTATTATTTTTG 93715 36 100.0 37 .................................... ATTTAGCTGAAGCAAACGGTGTCGCGCTCAAATATGA 93788 36 100.0 35 .................................... CAGGTCTTGAAATAATTTATTTTCAGTTGTTTCTA 93859 36 100.0 37 .................................... AGTTTATTGATGTTATCATATTCTGATAGTTTAATAC 93932 36 100.0 37 .................................... AGGAATTGATACAAATGAAAAACACATTAAATAACGT 94005 36 100.0 34 .................................... TAAAAACATTTTCAATTTCTTTTAGTAATTCTTT 94075 36 100.0 37 .................................... TGAAAATACCGTTGCATAACTTTAGCGAAGTCGTTTA 94148 36 100.0 35 .................................... TACTAGCCATTCCGACTAGGTCGTGAGGACATAAA 94219 36 100.0 38 .................................... TTTCATGTTCTTTACAATAGTTTCGAGGAGTACAACCC 94293 36 100.0 35 .................................... CATAATAAAGTCATCTAGGTCATAAACTGTAATAT 94364 36 100.0 36 .................................... TTCTTTTAGTTCTTTTCTTAGTTCAATGAATTTTTT 94436 36 100.0 36 .................................... AGCAAAAACTTATTCATTTATGAAGATTAATTTAAA 94508 36 100.0 36 .................................... CGCCAATGATTTCAGCAAATTCAAACACCATTTTTC 94580 36 100.0 41 .................................... CCTCAATACCTGTACCAACTTCTTTTCCCCAACCAAATACA 94657 36 88.9 0 ............C...T..T............A... | ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 99.3 36 AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Left flank : TATGAATGAAGTCGGATGTGTCGCGTACAGTAAAAAAGTGGGAGTATGGTAGTTTTGGCAATTGAATAGGCTGCGGAAATATGTTGACTGCAAAAATACATTGCACATTCCGATGAGCTTTTTGAGTACGAAAAAGTTAAGAATAAACAAAAATTGAATTGTGCACAGCTACAGCATATTCGACCAGAAGTTAAAGGTTAAAGAGAAGGTGTCAGTATACAAAGGAAAAGTGGAAAATATACGATAATTACCATGAACAAGAATTGATTTAAATGAAAACGTTCAAAAAGTGTAGAAGAGGATAATCATGTGGAGAGGATATGAATTGGGAAAAATTTATTGTATAATATCGATGATGTGTTTTGAAAATTTTTAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATTAGGATATTTTTAATGTTAAAGTTGTCTTAATTTCAGACGCGGTTAAATGATAGATATTCTCGCTATCAAGGGATTTCTATAGCTGACT # Right flank : CTTTCAGCAGCCTGAGAATATTCTTTTTCACTCAAGTCAATCGTATTGAAATACGGATATTAAGGGGGCTTATACCATTTATAGTATTTATAAAGTGCTTTTAAGGAGAGGTTACGATATCTGGAGCGTTGAAAAATGACATAACAACATAGAAAGATGAATGCAACGTTTTAAAAATTACAAATAATTCACAATTCTATTGTTGGAAATAAAGAAATGTTGTAAAATTTAATTAACATTTCAAGCGATAAAATGGGGTCTTATACATCTTGATGAATTTTTGTATTTATTGCATATTTTTTAGTCATAGCCATTTAAAGTGTATGTATTAGTGGTTTTGATTGGAATTTTGAAGAAATAATAAGCAGATTAAAGGTGTTGAGATTGGATATACTACTATATTGATATAATGACTCACTGAATCGTATTCTTGCTTTTATCTAGGGGGTGTAAAGATGAAGGATATCATTTATGTTGAGAATCATCATTTTGTCAGTGTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 734119-734814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENBX010000001.1 Staphylococcus pseudintermedius strain HSP143 contig_2_segment0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 734119 36 100.0 30 .................................... AAATTTTTATTGTCATTATCTGTTTCAATT 734185 36 100.0 30 .................................... TGCATGTACAAAATATACTGAATGCAACCT 734251 36 100.0 30 .................................... GTAATACTTTGCACCTAGATAGCGATACAG 734317 36 100.0 30 .................................... TGTCATTTGTTGAAAGTGTTGAGTACTTGC 734383 36 100.0 29 .................................... GAAGTATTGGGTTTATTGGCCGGTCCAAT 734448 36 100.0 30 .................................... GAACTCTGTTAACACGTGAATGATGTAATC 734514 36 100.0 30 .................................... AAATAGATGAGGAAACTTTTAATAGTATCA 734580 36 100.0 30 .................................... ATATTGAGCATATTCAATTTGTTTTTCAGT 734646 36 97.2 30 ............................A....... CTGTGGAATATTTTGAGTAACTTCTGTTGC 734712 36 94.4 30 .............A..............A....... CAACGTGCCATTTGTCATGTTTTTACGCGT 734778 35 88.9 0 ..........................-.CA.C.... | TC [734811] ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTGCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTACGAATCTCTCGATTGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //