Array 1 5300-6792 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWI01000093.1 Salmonella enterica isolate STY190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5300 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5361 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5422 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5483 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5544 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5605 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5666 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5727 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5788 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5849 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5910 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5971 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6032 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6093 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6154 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6215 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6277 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6338 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6399 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6460 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6521 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6582 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6643 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6704 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6765 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8686-10467 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWI01000040.1 Salmonella enterica isolate STY190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8686 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8747 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8808 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 8869 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 8931 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 8992 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9053 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9114 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9175 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9236 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9297 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9358 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9419 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9480 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9541 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9602 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9663 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9724 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9786 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 9889 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9950 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10011 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10072 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10133 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10194 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10255 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10316 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10377 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10438 29 96.6 0 A............................ | A [10464] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //