Array 1 17641-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHAT01000039.1 Neisseria meningitidis strain NM1938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17640 36 94.4 30 ........G...A....................... TACCCACGGCGGAAACCATTGCCACAAAAC 17574 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17508 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17442 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17376 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17310 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17244 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17178 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17112 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17046 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 16980 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 16914 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 16848 36 97.2 30 .....................C.............. TTGCGTCTATGGTGTCCTTTGAGATGTCCA 16782 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //