Array 1 71553-71293 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFI01000023.1 Porphyromonas gingivalis strain SU60 isolate YH522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 71552 37 100.0 35 ..................................... CTTAAGCTCTTTGATAGCAGGGATAAGCTTTCTCC 71480 37 100.0 38 ..................................... ACCAAGAGTAAAAAGAAAAATAAAATCTTTGTTTTCAT 71405 37 100.0 39 ..................................... ATCTATACCTTCCAAAGCCCAATAACAGTCTTTGGGAGA 71329 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 99.3 38 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCTGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCCAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAGGAAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGTCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : ACTGATTACCGAGGGGTTAGAACGAACGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACCTCCTTCGTATTCACACATCTATGAGGATGCCAAACGCACAAGCAAGCAAGCAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCGATGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTAAAAAATTCTCGCGCCACAGGGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGCAAAGGAAAGTTCGGTCGTTTTCGGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 80692-81057 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFI01000016.1 Porphyromonas gingivalis strain SU60 isolate YH522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 80692 36 97.2 30 ................A................... GTATCGAGTGGTATCCTACTAACGGCTGGG 80758 36 97.2 30 ................A................... AAGAAACAAATCGTATGGAAACTAAAAGAA 80824 36 100.0 30 .................................... TCTTCCTGTTTGAAGACGGAAATTCCGAGG 80890 36 97.2 30 .......A............................ GAAAGCAGATTAACACACTCATTGGGGCAT 80956 36 100.0 30 .................................... AAGCCTCGTGTTAAATACAAAAGCAGAACT 81022 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGATTGCAAGCCGATTTGATATAAATCGGGCACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCAAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCTGCCATACGCAACGCCGGCATATAACCACACAGGCCGAACGAAACCGGTCGAATAAAAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGATACAAATTCGCTGAAGAAGGGAGCACCTCGTTCGCCCGCAAATGTAGTGAAAAAGCCCCAACGCGGAAGAATCCCCACACTACACCCTCCCTCTACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATAATTCCACAGAAAGCGAGTGACGGTAAGGCTTTGGAGCCATTGCAAACCAGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCGATAAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCGCTCAAAAGTTCAACGTTCGCTTTTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCGCTGATGCAGGCCGGCCTGAAATAATAAGTTTTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 55803-50454 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFI01000001.1 Porphyromonas gingivalis strain SU60 isolate YH522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 55802 30 100.0 34 .............................. CAGATGCGGATATTGGAGCCGGCTATCCTTGCGC 55738 30 100.0 36 .............................. CTTCGTGCTTGAAGTCTTCCTGCAGCTCGATGAACT 55672 30 100.0 36 .............................. ACGGAGACACCCACCGCACCACCGACGCCGAGGTGC 55606 30 100.0 37 .............................. TTGGTGACAAACGGGGTGCATAACAGCGATATTTCGA 55539 30 100.0 36 .............................. TGTCAGGCACGAGCGATATCATCTTGCAGAGGTCAG 55473 30 100.0 36 .............................. TCGAGGACGAAGAGGGGAACGCCGTCGTTCTGAACA 55407 30 100.0 38 .............................. TGGCGAGGGGCGGCAGAAGCGTAAGAGTGCAGACAGCA 55339 30 100.0 36 .............................. TAGGAGGAAGCCTGCTGATCGACGTCCAACTTTTCG 55273 30 100.0 37 .............................. AAATCTTCGCCATCGAGTCATCGACGTAGCCCATCTC 55206 30 100.0 38 .............................. CGAATACACGATACCGGTTCCGGCATTCAGATAGTGAC 55138 30 100.0 35 .............................. GCAGATGGCTTCGGAACAGAATCATCGCCATATCA 55073 30 100.0 35 .............................. TTCCAGTACGCCGGGTCTTTACCGTCTTTTCGACA 55008 30 100.0 35 .............................. GGGCTTATGGCGTTCGTTCAGGTAGAGACGGTAGT 54943 30 100.0 36 .............................. AGAGCTCCGTAATTACAACCTTACAGGGGAGTTTCT 54877 30 100.0 37 .............................. GATGCGGTAAGAACACGCTAGTATCCGCCCGAAACAG 54810 30 100.0 36 .............................. ACCCTCACCGGTGAGCAGCCAATTTCTATTGAGTTG 54744 30 100.0 35 .............................. AGGGAAGGGATGCCGGCGTAACGCTGACGTCCCAA 54679 30 100.0 35 .............................. CGCGTAAAAGTTGATAGCATCAAATACGCTATCAG 54614 30 100.0 36 .............................. AGGAGGGGAGAATATAGAAAGTTGATAGATAGTCAT 54548 30 100.0 36 .............................. CGGCGGCACAGTATTTTACTTTTACTTCAAACCACA 54482 30 100.0 35 .............................. TGTCTGCATCGCTGCTATCATAGCCTTATACTCGC 54417 30 100.0 36 .............................. GCATCGCCCAGCCCGTTACGCAGCAGGGCTTCCTGC 54351 30 100.0 35 .............................. TCTATTACTATGATAGATAAATTCAATGAAAAAGA 54286 30 100.0 36 .............................. CCGTTTGTTCTGTGCCGTCTGGCAGCACGATAGAGA 54220 30 100.0 35 .............................. CGAAGGCCTCATTCCATGCCGTCATCCATTCCTGC 54155 30 100.0 34 .............................. ACCCGATGACGCCCCACGTGTTGCTGAACAGCGC 54091 30 100.0 36 .............................. AGGTCGTATCGTATTCCACGCTTCCGTCCGGAGTCG 54025 30 100.0 36 .............................. ACTGCCCTTTCCACGCTGACAGTAATGCCTCGCTGA 53959 30 100.0 36 .............................. TCCGGTACACCGAAAATGTCACGCTTATATACGATG 53893 30 100.0 34 .............................. TGGTAACTACAGATACCATCAGTCCGACAGAGAC 53829 30 100.0 35 .............................. CTACCGAAAAAGCCAGATCGAATTCGGCAACAGGG 53764 30 100.0 35 .............................. GGGTTTTTGCAACCGGGCAGTCCCGAGTTGAAGCT 53699 30 100.0 36 .............................. AGGTAGGCAATATCGATATCGTACGCCTCCTTGACA 53633 30 100.0 34 .............................. CCCAGAGGGGTCTATCCCCGCCGAGCGTGCCGGC 53569 30 100.0 36 .............................. GTCAAGGCAACCCGCGCCATCGTAAGGGCCTATGGC 53503 30 100.0 35 .............................. ACTAAAGCGACCCGATATTTTTTCGAGACGGAGCT 53438 30 100.0 34 .............................. TGCTCCTGCCATTTGTCCGCCATGCGCGCGGACT 53374 30 100.0 35 .............................. CATCGCCCAGCCCGTTACGCAGCAGGGCTTCCTGC 53309 30 100.0 36 .............................. TATTCTTGTTGCGTTCGGGGAAATCCTGACGTTTTC 53243 30 100.0 35 .............................. CAGACCTCGTTCCCGCCCATATCGGCGGCCAAATG 53178 30 100.0 37 .............................. ACATAAAAAAAGTGTTCCTAACAAGCAGCAGCAAGGA 53111 30 100.0 36 .............................. CTTCAGCGGTGAAGCCGTCAAGCTTAAAGCGTTTCG 53045 30 100.0 36 .............................. CTGTAAAGGAATTCACGAAGGACTTCCTCGAAAAGT 52979 30 100.0 36 .............................. GCGATCGCAACATCTTCAAACGCTGTCTTCACGTAA 52913 30 100.0 36 .............................. AGAACAATTACATCATAGTAAAAACACCCAAAGATT 52847 30 100.0 37 .............................. TCGATTTTTTGTCGCTCTCCGTCGGTCTGATCCTGTA 52780 30 100.0 36 .............................. GTATTTGAAAACAAAAAAGGCTACCCAGACTTTCTC 52714 30 100.0 35 .............................. AACTCAACCCCAACCATATGACAAAGAATTTGAAA 52649 30 100.0 35 .............................. TTTTTAGGGGTGTAGGCGATGGCGAAGTATAAGTT 52584 30 100.0 36 .............................. TAGATCGCCACCCGCTCCCATCTCAGAGACACGTAC 52518 30 100.0 37 .............................. TGTGCAATGCACAGGGGAAGACAGAGCCCTTGAATCT 52451 30 100.0 34 .............................. ATACAGGAGTATGCCGCGGATGTAGACGGTTGCT 52387 30 100.0 36 .............................. ATTCGTGCCTATAGATTATCATGATTTCTCCACAAT 52321 30 100.0 36 .............................. AGGAGATTTATTAGGTATAATATCTGCTATGTTATT 52255 30 100.0 35 .............................. TTCCACACTGTTACAGGACGGGTGGTCGGCTTCAC 52190 30 100.0 35 .............................. TGCTTGCTGCGGCGGCAAGATGTTTTACTTCGACA 52125 30 100.0 35 .............................. CATTGCCTCAACCCGCATTTGGCCGCCGATATGGG 52060 30 100.0 36 .............................. CAGGACGCGGATATTTTACCGTCAGCAATGCGGGTC 51994 30 96.7 37 .............C................ ATACGCTCGCGGCTATTCCCGCCCGCGCGAACTTGTC 51927 30 100.0 36 .............................. GGCCGCTATCTGCAGGACATCCGCGGTATCCACGAG 51861 30 100.0 34 .............................. AAGTCGAACAACCCCATCGTAGCCGCTACGGAAA 51797 30 100.0 37 .............................. CCTCTTGTAGAAGTCCATCGTCGGCGTGAAGTACTCA 51730 30 100.0 34 .............................. CGAAGAATTCATCAAGAAAGAGCTGAACCCGTTG 51666 30 100.0 37 .............................. TCGCGCAGTGGAGGCTTGCACCCCTTGAAGACCGCAT 51599 30 100.0 36 .............................. GAAGCAACAAAGACCCGATACCGCCTGCGCAAAGGG 51533 30 100.0 36 .............................. TGGTATCTATCTGCATTTCCGCTCTCACACGCTGCA 51467 30 100.0 35 .............................. TGTAGAACTCGCTGACATCGATAAGCCAGCCCGAC 51402 30 100.0 36 .............................. AATGAGAAAATTCATTCTTCTGCTGATTGCCGTGCT 51336 30 100.0 37 .............................. CCACACGAGACTCCTCTAAAGGCGGGGTGATAATTTA 51269 30 100.0 37 .............................. GTCGTTCTGAACATGGACGCCGTTCCTGACTACGTGA 51202 30 100.0 35 .............................. GACCCATCGAAGCACGCGGACATCACCTTCGCAGA 51137 30 100.0 35 .............................. ATTCTTCGCATTCTCGAACGGTTTCTATCACGAGG 51072 30 100.0 35 .............................. TACTGAGCCTTTTTCGCTGCAGTCCTCTGCAGCAA 51007 30 100.0 36 .............................. TAAAAAGTAAAATGAAAAAGCTGATTTTCTTTCTGA 50941 30 100.0 34 .............................. ACAATAAAAAAGTTTTTGGTCGCAATGAAAGATA 50877 30 100.0 35 .............................. AAGTCTGATCTCCGACTCGGAGAAGAAGAAACAGT 50812 30 100.0 36 .............................. TATTCACGGCTGCTGACGGAATGGCGACACTGACAG 50746 30 96.7 35 ...................A.......... TCATTTTAAGCTCTCCTGCCCTCTTGGCCTCCTTT 50681 30 100.0 36 .............................. GAGATGGGCGTCGAACAACTTCGATAAAAGGGGTAT 50615 30 100.0 35 .............................. ACACCTAATACTAAAATTAATATTAAATCAGATTT 50550 30 100.0 37 .............................. TGTGGCAACGCAACGGTGGAAGCTTGTGGCAACGCAA 50483 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 82 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CCTATAACATCCAAAATATTAGTGCGTTAACCGCTAATCAGGGAACGAATACATTGGCGTTTTCTTACGCCGAACTGACGTTTTGGAGGACGGAGATTCTGTAGACCCGACA # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //