Array 1 126186-128542 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFU01000010.1 Rubellimicrobium rubrum strain YIM 131921 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 126186 32 100.0 37 ................................ CCACCCTCCCCTAAGCCTTTCTGCCATGCATGGCGGA 126255 32 100.0 34 ................................ CTTGCAGGCAGGCGTCGACCAGGTTGTTGGCCAT 126321 32 100.0 35 ................................ AGCTAATGCGCGGCGTCCTGATCCTGGCCGCGCTC 126388 32 100.0 35 ................................ GCGCTCATAGGTCGGCCAGTCCACGGCAACGCGCA 126455 32 100.0 35 ................................ TCCTGCGGGACGCAATCCGGGACGAAAGGGAGGCG 126522 32 100.0 35 ................................ TTGAGCGTGAGCAGCTCGGCGTCGGCCTCGCGCGT 126589 32 100.0 34 ................................ ACGTGCCAAACCTCACGCTGCACTCCCGAGGCGG 126655 32 100.0 34 ................................ ATGTTCAGGCTGGTTGGTCGAGGTCGATGGCGTC 126721 32 100.0 35 ................................ CTGACCGACGACGACATCGTGGTCAACAGGCCGCA 126788 32 100.0 36 ................................ AGGCGCTGATGCACCAGTTCCCACGAGGTCTCCGGC 126856 32 100.0 35 ................................ CCGAATACATGGAGCGGCAACCGATGCTGCTCGCC 126923 32 100.0 34 ................................ ACATGGGGCGGCGATTGGGATTTCTACGATCCCG 126989 32 100.0 35 ................................ TAGGCAGGGGGCCGCGACCGGGCGACAGCGAGCCC 127056 32 100.0 34 ................................ TCATCGAACGCCCATTGCCCCATCGTGCTCTTGG 127122 32 100.0 31 ................................ GACATCGACCGGCCCCTGCCCCATGGGGGGA 127185 32 100.0 34 ................................ ACATTGTAGGACATGAGCCGGGCTGTGTCGCCGA 127251 32 100.0 35 ................................ ATCGTGGACGGCCAAGTCATCTGCGACCTCAAGGC 127318 32 100.0 35 ................................ CAAGCTGATCATGTCGGCCGGGAGGGCTGCGGCCT 127385 32 100.0 34 ................................ CCAAACAGCAGCACGGACTCGAACTCAAGGAAGG 127451 32 100.0 34 ................................ CCATCGGGGGCGGCGGCTCCGGCTCCGCGCCCAG 127517 32 100.0 34 ................................ CGCGTGGAGCTAGACGCGGGGAGCCAGAGCCACG 127583 32 100.0 35 ................................ CGCAGGGCGAAGGCGAGGAGGGCGTCCCAGGCCGC 127650 32 100.0 35 ................................ GCGCCGATCGCCACCACCACCGCCGCCGAGCTGGG 127717 32 100.0 36 ................................ ACGCACATCGCCAGGAAGCTCGGACGGCATCGCAGC 127785 32 100.0 33 ................................ TGTGGTGCAACAGGGCGATGGGTGGGGGGGGGG 127850 32 100.0 34 ................................ GACGCTCGACGCGCTCGACATGCCCGACGACAGC 127916 32 100.0 35 ................................ TCGCGAGCCCAGGGCGACACGAGCGACCAATGCTC 127983 32 100.0 35 ................................ TAGTGTGTGCGACTCCTGCCGGCACCTGCCGGCCC 128050 32 100.0 34 ................................ CCTAACTCCGACAGGAAAGCGCAGGCAATGGCGA 128116 32 100.0 33 ................................ CAGGAGTTTCGTGCGGTCGCTGGATCGGACCAC 128181 32 100.0 36 ................................ CGTGGCGCCCTGGTCGAGGCGGGTTTTGATTGCGAG 128249 32 100.0 34 ................................ AACCTTGCCCATGGTTGTCCCCCTGAGCGAAAGG 128315 32 93.8 34 ....T.T......................... CGAATCTTTTATTTGCGGAGCCCGGCCGGATAAG 128381 31 93.8 35 ....-..........................T AAGACTGGTTACGACTGAGCAATGTGGGAGCCTCG 128447 30 90.6 34 ....--.....T.................... AGCATCTTGGTCTTGACGGAGGTCTTGCGGACCA 128511 32 93.8 0 ..T............A................ | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.2 35 GTCGCCCCCCTCGCGGGGGCGTGGATCGAAAC # Left flank : CTGGTTTTGGAGTTGAGGAATGCTGGTGCTTGTGACCTACGATGTGAGCGTCACCGACGCGGAAGGTCCGAAGCGGCTGCGCCGGGTGGCGAGGGCGTGCCAGGACTGGGGTCAACGCGTGCAGGCCTCGGTCTTTGAGGTAGAGGTTGACCCTGCGCAGTGGACCAAGCTTCGTGCTCGGCTCGAGTCCATCATCGACCCTGCGCGGGACTCCTTGCGCTTCTACCATCTTGGCTCCAACTGGCAGCGGCGGGTGGAGCACGTTGGCGCCAAGCCGGCCCAAGACTTGGGCGGGCCGCTGATCGTGTGACGGCCGAGGCGCCTGCGAACCCTAAGCGTGCTGCATCTTGGCGCAGGGTTCGCAAAGGGCTAAGTACCTGAAGTTGCGTCATCTTATACAATGACCTAGGCAGAACGCCTGCTACCCGGTCGCGGTCAGGTCGAGGTTCGCACGTCGAATGGCATTCTGCTTTCACGTTCCCAGAGTTAAAGAGGGGGCA # Right flank : CTCATCATGGGAGCGATGTCGAGAGAGGGCATCATGTTGCCTCCCTCGGGTGATTCGTTGCTGCAACAGGTGGCTAGCAACGCCCCGATACGGGCTTGATCGCAAGCCTAGGCTCGCCGAGTCTGCACTCATGCTCGACGCTCTCCAGCCCTGGCTTCCTCTGCTCGACGACGAGCCGCGCGCCGATCCGCCGGCCCGCAAGGCTCGGAGGCGGCCCGTTGCCATGCCGCAGGTAACAGCCCCTGCCCCTCAACACCGAGCGGCGCGTCAGGCCTTCTTGGGTGTCGCCGCTGCCTGGGGCCTTACGGCGGCAGAAGCCCTGCGGCTTTTGGGCGAGCCCGTGAGCCACGAGGCCGAACGCTTGGAGCGGCTGGATGGCATCCTGGGTGCGCATCGCTCGCTGCGCCTGATCTCGCCCGAGCCCGCGCTCTATGGCGCGCGTCTGCGGCAGCCCGAGCCGGCCTTCGACGGCGCCTCGCTGCTGGAGGTCATGCTGCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //