Array 1 2986485-2984581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032494.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SO21 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2986484 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 2986423 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2986362 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2986301 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 2986240 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 2986179 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 2986118 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 2986056 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2985995 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 2985934 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 2985873 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2985812 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2985751 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2985690 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2985629 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2985568 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2985507 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2985446 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2985385 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2985324 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2985262 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2985159 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2985098 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2985037 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2984976 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2984915 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2984854 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2984793 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2984732 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2984671 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2984610 29 96.6 0 A............................ | A [2984583] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3004109-3002616 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032494.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SO21 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3004108 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3004047 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3003986 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3003925 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3003864 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3003803 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3003742 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3003681 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3003620 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3003559 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3003498 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3003437 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3003376 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3003315 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3003254 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3003193 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3003131 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3003070 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3003009 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3002948 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3002887 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3002826 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3002765 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3002704 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3002643 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //