Array 1 164422-162031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRQ01000011.1 Salmonella enterica strain CVM 43799 43799_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 164421 28 96.6 32 -............................ GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 164361 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 164300 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 164239 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 164178 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 164117 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 164056 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 163995 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 163934 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 163873 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 163812 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 163751 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 163690 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 163629 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 163568 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 163506 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 163445 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 163384 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 163323 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 163262 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 163201 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163140 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 163079 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 163018 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162957 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162896 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162835 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162774 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162712 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162609 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162548 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162487 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162426 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162365 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162304 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162243 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162182 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162121 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162060 29 96.6 0 A............................ | A [162033] ========== ====== ====== ====== ============================= ========================================================================== ================== 39 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //