Array 1 64827-63595 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVHB01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033849 CFSAN033849_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64826 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 64765 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64704 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64643 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64582 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64521 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64460 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64399 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64338 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64277 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64216 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64155 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64093 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63990 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63929 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63868 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63807 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63746 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63685 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63624 29 96.6 0 A............................ | A [63597] ========== ====== ====== ====== ============================= ========================================================================== ================== 20 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83001-80959 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVHB01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033849 CFSAN033849_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83000 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 82939 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 82878 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 82817 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 82756 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 82695 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 82634 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82573 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 82512 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 82451 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82390 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82329 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82268 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82207 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82146 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82085 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82024 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 81963 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81902 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81841 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81780 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81719 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81658 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81597 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81536 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 81474 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81413 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81352 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81291 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81230 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81169 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81108 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81047 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 80986 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //