Array 1 111-1518 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNHX01000003.1 Sphingobacterium composti Yoo et al. 2007 non Ten et al. 2007 strain DSM 18850 Ga0131137_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 111 30 100.0 36 .............................. AATCTTTACAAATTTGACACAACCACATCCCCAATT 177 30 100.0 36 .............................. TTCTGTAGTAGCTCTGTACGTGTAGTTGTTGATCCC 243 30 100.0 34 .............................. TCTACTACCTGTCTAATTACATTAGATACCAATT 307 30 100.0 37 .............................. CTACTTATAAGGGATATTTATAGCTAATTTCTATACA 374 30 100.0 36 .............................. TTGGATAACATCCAAATACTAGGCGTTGAGCAGATC 440 30 100.0 35 .............................. ATAAGATAACCACGGGTAAAAATCTTAATAAACTA 505 30 100.0 36 .............................. TCGGAGGAAACTCACGGTTGTTAAAAGTGTGATCCG 571 30 100.0 34 .............................. TCTCGTCTGATGTGGCTAGGTCGTCTATATTAAA 635 30 100.0 34 .............................. AGTTTTGCAGATACGTCAAAGAACGTGTTAAGCG 699 30 100.0 36 .............................. GTTTAGTCTGTTTCCTTTGCTCGGCTAATGCTTCCT 765 30 100.0 35 .............................. TTGATAGTGACCTCGGCAAGAAAGGTTATTACATC 830 30 100.0 35 .............................. GCAGCTCTAGAAGCAGCCCCCAAAGCCCTATTGCT 895 30 100.0 36 .............................. CAGGAAACCTCTTTTACTCCTTCAGGCAACTCCACT 961 30 100.0 36 .............................. TGGCATAAGCAAGAACATTTTCACGCCCTAATCTAT 1027 30 100.0 35 .............................. ATTTTTATCGTCGATAATTTTTTGAGAACCATTTT 1092 30 100.0 35 .............................. ACGTTCAGGATGAGATGGCGAAGATTAAGGCTGAG 1157 30 100.0 36 .............................. TGTTTCGGTTAAAATACACCGATCGATACCGGCGTG 1223 30 100.0 35 .............................. ATTTATAATAGTTGATCTTTTTTGTGGCGCCGGTG 1288 30 100.0 36 .............................. CCGTAAAGTATTTCCGATGTTACGTTGTCACGGAGA 1354 30 100.0 36 .............................. AGCATCTCGGCAACCTTTGTCCTGTTAAAATCTTTG 1420 30 96.7 36 .....................C........ ATAAGTGGCGGGCACCGACAGTCGCGCGGACGAAGA 1486 30 86.7 0 .....................C.A....CA | AGC [1507] ========== ====== ====== ====== ============================== ===================================== ================== 22 30 99.2 36 CTTTTAATCGCACCATACAGGAATTGAAAT # Left flank : TCCTCTTTGAAGCGTTCAAAATCAAATTCCTCTTTTTCCATTTGCTGTGTCTAATATAAAAATTCTTTATTTGACACAGTTTACTTTACACCCTCTCTTTCTGCAGTCTTC # Right flank : AGCTCTAGCCAGCTGAGCTATTCCTTTCACATCCAAATAGATCAAATGCGTTTAAAAAACACCTAATTTTCACCCGTGCCCTATTTACCCCGCTGAAGCCACTAATTCCCTTTCTGTTCATCAAGTAAGCTTTCGAACGCATAGCTTCCTGAGCCTATCTGTTCCTGCTTTCCATCCGGCAGTATAACAGTTGCTGTCGTATTAACCGGAATCTGTACGCGCAGCCGGAAACGGTTGCCCTCGATCTCCCAGGATGACCCCAGTAATCCATAGCTCGTCATCAGCTCTGCTTTTGCGTGGTTCAGCTTCCCTCCCGGCTGAGGCCTGATGATGATTTTCTTATAGCCGGGAGTTGCTCCGTCGGGCGAGATTCCGGCGACACTCCGGTACATCCAGTCACCGATTGCTCCATAAGCATAGTGGTTAAATGAATTCATAGTTGCTGTTTGGAAGCTGCCATCCGGCTTGATGCCATCCCATCGTTCCCATATGGTCGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGCACCATACAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 18905-22879 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNHX01000035.1 Sphingobacterium composti Yoo et al. 2007 non Ten et al. 2007 strain DSM 18850 Ga0131137_135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18905 30 100.0 36 .............................. ATATTTCCGGGCGAAACCCTTGTTATGCCACAATAT 18971 30 100.0 36 .............................. TCGTAGACCTTTACAACGATCTTATCAACGGTTAAA 19037 30 100.0 36 .............................. GCAGATGCAGCCTTTCACGTTGTCGCCGTCCTGGAC 19103 30 100.0 36 .............................. AAGGATATACCCCTCCTCTTCTTCCACGGCGTAAGA 19169 30 96.7 36 ..............G............... TAATAAAGAATCGGAAAGCGACTACGATCTCGGCAG 19235 30 100.0 37 .............................. ATGAACAAGACAACAAACTATTCGCTTTTCGGTGATA 19302 30 100.0 36 .............................. AAGCAAAGGAGCAGGAGGAACTTAGACGCAAGCAAA 19368 30 100.0 36 .............................. TGGATGGAGGATAAAGGAAATAGCCACCTTCTCCGC 19434 30 100.0 35 .............................. AAGAAAAAGGGGACAGTAGGATAAACCCATTCGGG 19499 30 100.0 37 .............................. TCGGTACGTTCGAATGGTTCACAAATAAACTTTGTCA 19566 30 100.0 36 .............................. TCTCTTTGTATAGGTCGGATAGAGGGCGGAGTAGGG 19632 30 100.0 36 .............................. TAAACAGCGTTAGCAAATCCTTTCAGGCGGCTAAGG 19698 30 100.0 36 .............................. AAAATGAAAGACGGGAGATACTCCTCTCCTTTATTC 19764 30 100.0 36 .............................. CGGAGATGGTAAGGGCTACCAGCGACGTGTTAGGCA 19830 30 100.0 35 .............................. CCGTGACCGCCAGTGCTAATAGCTTAGTTAGATTT 19895 30 100.0 36 .............................. TGATGATAGTGAATTAGATAACCTTATGGAACGGTA 19961 30 100.0 36 .............................. GAGGACTGATAAAAATAACATGATAAAACTAGCTTT 20027 30 100.0 36 .............................. AAAAGCCTTTCCGTCGTTGTCGACTTCCACGGTCGA 20093 30 100.0 36 .............................. CGTCTCAATCCGCGCTCAACAACACGACCTAAACGT 20159 30 100.0 36 .............................. TAAATATTATGTCGATGGTGTTTCTGCTAAAGTATA 20225 30 100.0 36 .............................. AAGCCTCTGTATTGCCTTCGTAATCTTTACCAACCC 20291 30 100.0 35 .............................. CCATGGGTAGAGTAAGGTTCTGCGTTGCGTCATAG 20356 30 100.0 35 .............................. GCGGAGTTATATCGAGTTATGGATTATTTCTCGCG 20421 30 100.0 35 .............................. TTGTAAAGGATGAGGAAGAGGACGTAATACACTGG 20486 30 100.0 35 .............................. CACCTAAAAACAGAGCATAAGATAAACGAGGTTTT 20551 30 100.0 36 .............................. ACGGTTTATGTACCAAGAATCGGAGGATTTTAGACG 20617 30 100.0 36 .............................. TTTGTTTTTCTAGGATTCTACGAAACGTCAATCACA 20683 30 100.0 36 .............................. TACTGGCAGATGGAAACAGAGATCGGCACCATAGGC 20749 30 100.0 35 .............................. GAGAGAGAGGAGGTGGCAAATGACTAACACTCTAG 20814 30 100.0 36 .............................. GGTGCAGCGCGGTGTGTATGATATCGCTCCAGAGAG 20880 30 100.0 36 .............................. GAGGGTGTAGCGGTGTGGTAGCACATAGAAAACTAG 20946 30 100.0 37 .............................. TTAATCTAATGTCACCGGCTTGTTTAAGCCCGTAGAA 21013 30 100.0 36 .............................. TCGTTACCCAATAGATAGACGTTTACCTGAGATTAT 21079 30 100.0 35 .............................. CCATATACAAAGGGGTTTATTGGGATAAGAGTAGA 21144 30 100.0 36 .............................. TACGAAAATAAAACAGACCTCGATGCAGGTAGGATG 21210 30 100.0 36 .............................. AACGTCCTAATCATACGCGATGCGCTGGAAAATATG 21276 30 100.0 36 .............................. ACAGGAGATGATTTACCACCTTTACTCTCGTAGGTA 21342 30 100.0 35 .............................. TCTGTTGAGTTACGCACCGCGCCACGCCGCCCCGC 21407 30 100.0 35 .............................. GCGTAACCGATTATATTGCTATTGATGCTTACGAA 21472 30 100.0 35 .............................. AATCCTTTAACCGACCTAGCAACAGCTCTTTCCAT 21537 30 100.0 34 .............................. TTTTACAAGTTTTTTTAGTTCTTCTATGAATAAA 21601 30 100.0 36 .............................. AAAACAAACTGAAAATAATAAGCCGATGTGACATAA 21667 30 100.0 35 .............................. TACATATAAGTCACCAACTTCTTAACCGCCGTAAT 21732 30 100.0 35 .............................. TAAGTTAACACCTTGCGCTCTATGCTCTGCGTGTT 21797 30 100.0 36 .............................. AAAACAAACTGAAAATAATAAGCCGATGTGACATAA 21863 30 100.0 36 .............................. TGATTTACCTCATGTTGATGCCCCTCTTTTCCAACA 21929 30 100.0 35 .............................. AGGATGCTCAGATTAAGAATAGGGAGTCGGTGATC 21994 30 100.0 36 .............................. CCAATTGAGTAGTAGTCCAGATAGAAATCGCCATTG 22060 30 100.0 36 .............................. ATTTTTTTACGCGGTTTGAAATATCACAAAACTGTT 22126 30 100.0 36 .............................. CTGCTCAATCCTTTAATAACTGTACGTGATTTAATA 22192 30 100.0 35 .............................. TCTTTGTGATGTCGGAAGTCGCAAGGGCTTCTAAG 22257 30 100.0 36 .............................. GTTTATTTTCACCATCCAGTTCGTAGAATAATACTT 22323 30 100.0 35 .............................. AACGTAAAATCGTCGCCTAGCATAGAGGCGACGAG 22388 30 100.0 36 .............................. AGGCTATTTTTAAGACCGCATCTTTTACAAATACAC 22454 30 100.0 37 .............................. GCGAAAAAGCAGGTTTTAAAGTTGAGGAAGGGTATAT 22521 30 100.0 36 .............................. TACAAAAGGAGCTAAAACAATGTTCAAACCAAACAC 22587 30 100.0 36 .............................. TATAAATGGTGAAACATTAGATAATAGAAAGAGTAA 22653 30 100.0 35 .............................. AGATTTGGTATAACATGAAACAACAAATAGAACAG 22718 30 100.0 36 .............................. AAGTTAGTTATTTCAGTTATTCCAATGCCGGCAAGC 22784 30 100.0 36 .............................. TAGATAAAATGAGTAAAATGAGGGATGATATTCCTA 22850 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 61 30 99.9 36 CTTTTAATCGCACCATACAGGAATTGAAAT # Left flank : CGTGTCAATCCTAAAAAAATGTATGTTATCTTAGTATATGATATAGGTGAAAAACGCGTAGGCAAAATGCTTAAACTATGCCGAAGATACCTGAACTGGATACAAAATTCTGTTTTTGAAGGCGAAATAACAGAGGTAAAACTGAAAGAACTGCTTTCGCAGGCCAAGAAGATAATGATTCTGGAGGAAGACAGCGTTTTAGTATTTAAAAGTAGAGAGGAGAAGTGGTTGGAAAAGGAAGTGCTCGGGCAGGAGAAAAACGAACTTGACACGTTCTTATAAGTGCGACAACATGTCGTCGATGAGACGATACGGATCTGTTCTTTGACATCTTTAATACTATTTTACGATCTAAAATGGCTAAATCAATATTATTAATGCGGTTGTCGATCGCTCGGCATTTTCCGGTTATTGCCGGCCGACTAATCCTATGGAGAAAAATGTAAATAAAATCGGGCTTTAACTCATTTAAATGTATATTTGGAGACCGTTTTTGACGG # Right flank : GTTTGAACAGGGAAATACTGTCTTTCTGGGTAGTGTAAACTGAACTGTGTCACATCACTCCTTTTAGGGTTCGCACTAGAGGCTTTCAGCCTCTAGTGCGAACCCTAAAAGGAGTTGCCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGCACCATACAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA //