Array 1 1679547-1680001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778147.1 Escherichia coli isolate SC418 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1679547 29 100.0 32 ............................. ACTCCTGCTGTAGCGAAAAGGGCAGAGCATAG 1679608 29 100.0 32 ............................. CGTTGACACCTCCCGAGCCAGGAGTGATACCC 1679669 29 100.0 32 ............................. CGCTGATCTCGGGAATTAGGTGTCCGGCCTGT 1679730 29 96.6 32 ...............T............. TGAGCGGTGATTATTTAGAAGTATCGACGCGG 1679791 29 100.0 32 ............................. AAAACCCTAAAAATGATTTGCTGGATTCAGTT 1679852 29 100.0 32 ............................. GCAAAAAATACGATCTCGCCGGTGTTTTCAGT 1679913 29 93.1 32 .....A.......C............... TATAACCCGCCGTCTATTTCTCGTGTTATTTC 1679974 28 86.2 0 ............TC.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGAATTCCACTCATTTATATTGTTTGTCGCCTCTGAAAACCCCTCTTTTTTGCCCATCCTTAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGAATAGAGTTATTTTAAATATTTATCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATAGAGGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATTCAGGTACGTTCATGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGGATTACATCAGTATGTTTGGTTAACTCCTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGTTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTTGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1705113-1706361 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778147.1 Escherichia coli isolate SC418 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1705113 29 100.0 32 ............................. AGTGAGCAACAAATTGCTGATGCGCTGGATAT 1705174 29 100.0 32 ............................. CTTTCCTACTGAATCCGCGTCGGTTGCCTCTG 1705235 29 96.6 32 ......T...................... TTACCGGACGCGCTGGAATTAACACAGGATGA 1705296 29 100.0 32 ............................. ACGTTCTGCCAGTGGCGTCAGGTCGTTTTCCT 1705357 29 100.0 32 ............................. CTGGATAAACGTTTCGCCCTGAATAAATCCAT 1705418 29 100.0 32 ............................. GATTCCCGCACATTGCGCACGATGGGCGCGGC 1705479 29 100.0 32 ............................. CAGGTAAAGGCATTCAGGCTGGTGGAAGTAGT 1705540 29 100.0 32 ............................. GAGCATTATATTTATTCGACGCTGACAGGCTC 1705601 29 100.0 32 ............................. ATTCCGGGCGCTCCTTTTTCTGAGGCTGTTTA 1705662 29 100.0 32 ............................. CCGGGGGATATTCTTGGGTCCGGCGATGTTTA 1705723 29 100.0 32 ............................. AATGCGGGGTTTGCGCCAGCCGATAATGACCA 1705784 29 100.0 32 ............................. ACCAGGGAAAGTGCCAGCCTCATCCTGTGTTA 1705845 29 100.0 32 ............................. GTTAGCCAGCACACAACGTTGAGGCCATTACA 1705906 29 100.0 32 ............................. AGAGCCTTTTTGTGAGCGAAACTGGAATCGTT 1705967 29 100.0 32 ............................. AACTCGTTAGCAGTATCGTGGGGAGCGTAGAG 1706028 29 100.0 32 ............................. CCATCAATGTTACACGTTAGGTCGATTGAACC 1706089 29 100.0 32 ............................. AACTCGTTAGCAGTATCGTGGGGAGCGTAGAG 1706150 29 100.0 32 ............................. CCATCAATGTTACACGTTAGGTCGATTGAACC 1706211 29 100.0 32 ............................. GCAGGCTTGCCCGCATCCTCTTACACTCGCGG 1706272 29 100.0 32 ............................. AAGGGGACGGCTACGGGAAGCCGCCTATTGAC 1706333 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //