Array 1 481198-481346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJV010000002.1 Cronobacter sakazakii strain Crono05-YL Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 481198 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 481258 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 481319 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-1007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJV010000004.1 Cronobacter sakazakii strain Crono05-YL Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 64 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 125 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 186 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 247 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 308 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 369 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 430 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 491 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 552 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 613 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 674 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 735 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 796 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 857 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 918 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 979 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GCC # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27444-28632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJV010000004.1 Cronobacter sakazakii strain Crono05-YL Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27444 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 27505 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 27566 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 27627 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 27688 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 27749 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 27810 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 27871 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 27932 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 27993 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 28054 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 28115 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 28176 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 28237 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 28298 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 28359 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 28420 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 28482 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 28543 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 28604 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1555-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJV010000007.1 Cronobacter sakazakii strain Crono05-YL Scaffold7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1554 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 1493 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 1432 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 1371 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 1310 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 1249 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 1188 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 1127 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 1066 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 1005 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 944 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 883 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 822 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 761 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 700 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 639 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 578 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 517 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 456 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 395 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 334 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 273 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 212 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 151 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 90 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //