Array 1 85-724 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGHW01000076.1 Escherichia coli strain SI-NP047 sequence076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 85 29 100.0 32 ............................. CGGATCGTGTGTGTGCCAGCGCTGCGCCCAGG 146 29 100.0 33 ............................. GGATTTGCGCGTGGTGAACACGGCAACACCTGC 208 29 100.0 32 ............................. ACCATAACCTGCCCACCCGTTATTTTGTCATC 269 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 330 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 391 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 452 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 513 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 574 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 635 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 696 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83081-81831 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGHW01000003.1 Escherichia coli strain SI-NP047 sequence003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83080 29 100.0 32 ............................. GCCTGGATTTTTTCGAACACCACCCGCTCGTT T [83052] 83018 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 82957 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 82896 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 82835 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 82774 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 82713 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 82652 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 82591 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 82530 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 82469 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 82408 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 82347 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 82286 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 82225 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 82164 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 82103 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 82042 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 81981 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 81920 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 81859 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //