Array 1 25405-23866 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFI01000006.1 Streptococcus mutans strain PKUSS-9 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 25404 36 100.0 30 .................................... GTAAAAAGGATATCTTCTCTATATGTTCCG 25338 36 100.0 30 .................................... AACATTAACAATAACAACTGTAATAGTTGT 25272 36 100.0 30 .................................... TAGTAAACATAAAGAGACTTTGCAAGCCGT 25206 36 100.0 30 .................................... TTCTTAGCGCGTGCAGTTTTGGCTGTTCCA 25140 36 100.0 30 .................................... ACTGTTTGGTCAAGCTATGCCATATGCTTC 25074 36 100.0 30 .................................... CTTATCCAGTGATAACACTAACTCTAACAC 25008 36 100.0 30 .................................... TTACAAGTGGCTATTAAACGACGCAGAAAT 24942 36 100.0 30 .................................... AAAAACATGCCTCAAATCATCAACTTTTTC 24876 36 100.0 30 .................................... TAGCAGATGAATTAAGTTTTAAGTTGAAAG 24810 36 100.0 29 .................................... ATTTTTTTAAAAAATATTTTGAGACCCCC 24745 36 100.0 30 .................................... TTTAAAAAAGGCTTTGGTCAATGCAGAGGT 24679 36 100.0 30 .................................... AAACGCTGATAGTCGTCTGTGTCAAGATTG 24613 36 100.0 30 .................................... GAAATGAAAATTTGGCGTGCTGAATGCTCA 24547 36 100.0 30 .................................... TCTAGCTTGCTATCAAAAACGCGCGCGTCC 24481 36 100.0 31 .................................... CCGTCAATACTTGGGAATATTGACCATACAG 24414 36 100.0 30 .................................... AGCAACCATCACTCAAATGGCTAAAGATAA 24348 36 100.0 30 .................................... ACACAAGCAATTCTTAATTGATACTGAAAT 24282 36 100.0 81 .................................... CTCCTTAGATGACATCTTCTGGTAAGCCATNNNNNNNNNNNNNNNNNNNNNNNNTACAAAAGAGGTTTACTTTATCAAGTA 24165 36 100.0 30 .................................... CTTTAAGTTTTTTCTTGGAAGAAATGTACT 24099 36 100.0 30 .................................... AAATTACTTAACAGATTTGCAAAAGCTCGA 24033 36 100.0 30 .................................... AAAGTATCTGGAACTCAAGAAGTAAATGCT 23967 36 100.0 30 .................................... ACTAGCAACACAGCACCTTTCAGCGCAAGT 23901 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [23886] ========== ====== ====== ====== ==================================== ================================================================================= ================== 23 36 98.9 32 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGCGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATAAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : GCATTATGCGAAAGAGTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTGTTGACGTCCTAAGGTTTGATACAGATCTTTAGCTTTTATCACATTGTCCCAATGAATAATG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //