Array 1 307082-298516 **** Predicted by CRISPRDetect 2.4 *** >NZ_RIAQ01000008.1 Paracoccus pantotrophus strain NJUST38 Scaffold1_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 307081 32 100.0 35 ................................ GCGCGGCCCCGGCATCGAGACGTAGACCTGCGGAT 307014 32 100.0 34 ................................ ACGCATCACTTGCACCACGGAACGAAGCTGCGTG 306948 32 100.0 36 ................................ ATCTCATAGCCAAGCGACGAAGCCGAGCCTTGGCCC 306880 32 100.0 35 ................................ AGGCGCATCCCATACCCCCGGAACATCGTCCGGGG 306813 32 100.0 34 ................................ CCTTTTCCCGACCGGGCGCAATAGGATTTGCCAT 306747 32 100.0 34 ................................ ACGGTAGAGAACATCCGCGACACGTTCGGAGATC 306681 32 100.0 34 ................................ GCCAAGCTGCGCACTGCTTATGCTGGTAATGATG 306615 32 100.0 35 ................................ ATAGCCCTCGGCTTGGACGTAGAGCGCAACGGGCG 306548 32 100.0 34 ................................ ATCCCATACATCAGGGGCAATATCCGAACCCGTG 306482 32 100.0 34 ................................ CTTGCAAATGGTAGTGGATAAACAGCCTGATGGA 306416 32 100.0 34 ................................ GACATGGCTATTGCCGTCTCGCGCACGCTTTCCG 306350 32 100.0 35 ................................ AAAGGCATCCGCGTTCTGGTCCGCAAAGACATCAT 306283 32 100.0 34 ................................ CTTACGCTGCTTTTCCCGAACGCCCTTGTCGGAA 306217 32 100.0 35 ................................ CTTGCGCAAATCGCGGATCAGGTCCGAGGACCGAA 306150 32 100.0 33 ................................ TGCGCATAACATCGGCGAAGCTGTCGATGTGGT 306085 32 100.0 35 ................................ TTTCCGCGGAAGCCGAGACGAATGCGCGGCGAGGC 306018 32 100.0 34 ................................ TGCTTGACAGTCCATTATGAAAAATCGCATGCGC 305952 32 100.0 34 ................................ CTCGATTTCCTCGGGCGTCGGATCATGGGTTGCC 305886 32 100.0 34 ................................ CTGTTGCCGATCTATCAATTGTCGGACGTGGCGT 305820 32 100.0 35 ................................ AGCATCGTTACCCGTCAGGCTGGCGATGCCCGGTA 305753 32 100.0 35 ................................ CCTGATCGCTGGTATATGACAGGCGGTCGATGGAC 305686 32 100.0 35 ................................ TCACGCAACACCTCGGTCATGCCCGCATAGGCGGC 305619 32 100.0 35 ................................ CCGGCCGACCTCGGCGACCTGCCCGCTGACCAGGT 305552 32 100.0 35 ................................ ATCTGGAAACTTGTGCAGATCGAGGACGGCCCGGA 305485 32 100.0 37 ................................ GCAACGATGGCGCAAGCATTGAATCCGGCATCACCAT 305416 32 100.0 34 ................................ CCTGACGTGAAGGAAGGCGCGGCCGATGCGCCCT 305350 32 100.0 35 ................................ TCGATCCGTTGGGAAGGGCTGGCGGGCCATGCGTG 305283 32 100.0 34 ................................ ACCCACCAGGCGCGCGCTTGGTGGGGACAGATAT 305217 32 100.0 35 ................................ CTCCACCTGGCTGGCGTAAGGGGGCACCATGGCAC 305150 32 100.0 34 ................................ CTCGTTTCGATGGGCTGGATTCCTTCAATCGCTC 305084 32 100.0 36 ................................ TGGGCGATCTGCCCGCCGATCAACGCAGGCAGGCGC 305016 32 100.0 35 ................................ ATCGCCAGATCGCCCGGCAGTCCGCGCACACGCAC 304949 32 100.0 35 ................................ ATGAACCTACGCAAAAACAACGCGATGCCTTGGAC 304882 32 100.0 35 ................................ CGCGCCGGGAAAGGACTTTTCTGATGGCTTTGCTC 304815 32 100.0 33 ................................ TTGCCATGTCCAATCTGGTGCTCCCCTCGGGCG 304750 32 100.0 33 ................................ CTAACCGATTCGCCCTTGCCGTCCTGCTGGCAG 304685 32 100.0 35 ................................ TCGTGATACCAAGCGAGGGCGTCTATACCCGCGCC 304618 32 100.0 35 ................................ ATGTCGTGTCTCCTTTGGACCTTTGGGCCGGACCA 304551 32 100.0 35 ................................ GTTAGCCATACTGCTGAGGTCAGGCCGTGCAGGCG 304484 32 100.0 36 ................................ ATGCCAGCATCGGCACGGAAACCGGCGATGACGGAT 304416 32 100.0 35 ................................ ATGTCTTCGCGCTTTCGATGATGGATTTCGGATAG 304349 32 100.0 34 ................................ ACGATCGCTGGCTTCGAGGGCCGGTATGTCTGGA 304283 32 100.0 34 ................................ GCCTCCGCGTTGCCCCGACCGACGCGGTCGATCA 304217 32 100.0 36 ................................ CCTTCGTCATCCATGAACAGCGCAAGATTTTCGGGC 304149 32 100.0 34 ................................ ATGCGCACCTTCCGCTCGGCGGCGGGCATGGCCG 304083 32 100.0 34 ................................ ATGCCCTGGCGCGGTGTCGCGGCGATCGCGACAA 304017 32 100.0 36 ................................ ACCTGGTCCTGTCCAAGGGACGCGATCAGCCCGGTC 303949 32 100.0 33 ................................ GGATGAAGTAGCCCAGGTCCTTGGCGATCACGA 303884 32 100.0 35 ................................ CGCAACGCCTCCAGCGTCGGAACGCCGATCCGGGC 303817 32 100.0 34 ................................ AGCTCGACATGGTGAGCCCGGAACTTGTTGCCGG 303751 32 100.0 34 ................................ TTGGCGTCGGCAGGATCACGCAGCCAGCGGGCAT 303685 32 100.0 33 ................................ CAGAGCGTCAGCCGGAAATTCGGCGCGCGCCGC 303620 32 100.0 34 ................................ CAGCTGTTGGACACGGCCCTTCCGGCCGACACGG 303554 32 100.0 35 ................................ AAGAGCCCTTGAACCAAGAGCCATTGACCGATGCC 303487 32 100.0 33 ................................ TCCGTTGAGGGCATCCCATATCGGTCTCGGCCC 303422 32 100.0 35 ................................ AGCCAATCCCTGCGGAAAGCCAGTTGATCAATGAT 303355 32 100.0 36 ................................ ACCGCCCAGGTCGATCGCAGCGGCATCGACCAGGAC 303287 32 100.0 33 ................................ TGGATCTGGGCGCGCGACTGTCGCGACATGTTG 303222 32 100.0 35 ................................ AGCGCCATGTGCTGTGCCCCTCTACAGGGTCGACC 303155 32 100.0 35 ................................ ACCACGGTCGGTCAGTTGCACCAGAAGCCCGGTGC 303088 32 100.0 35 ................................ GGTCACGACATTCCTGACATCCGAGGTTCCGACCG 303021 32 100.0 35 ................................ GGCATGATGTCCGTCGCATCGTGCTCACCGATGCC 302954 32 100.0 36 ................................ CTTGACCCGCTCGCCAACCCGGATGCGGTAGCCGCC 302886 32 100.0 34 ................................ GTCCCGGATCCGGCCGAGCGCCATGGTGGCACTG 302820 32 100.0 36 ................................ GGGAGCGTCCCACACCCCCGGAACATCGTCCGGGGG 302752 32 100.0 35 ................................ TACGCTTAGTCGTCGCTGTGCAATAGCGGCTGACC 302685 32 100.0 37 ................................ TTTCAGGCTATCCACGGGGATAAGCTGACCATCCGGG 302616 32 100.0 36 ................................ AGGACGGCAATCGTCATGTGCGGGATCGACGCGGGG 302548 32 100.0 35 ................................ TGCATCATGTGATCCTGTGGGAGAAGGAGCCGGGG 302481 32 100.0 35 ................................ CTGAAGGTAATCGCCAGATCAGGCATCGTCGCCCT 302414 32 100.0 34 ................................ TCCAGCATGACCGAAATCTGGTCGATCATGAGAT 302348 32 100.0 35 ................................ GCAGTGGGACCGTGCCGATTGGGCGCATGTCGATC 302281 32 100.0 34 ................................ TCAAATTTCGGACCGCGTGCGATCCAGATATGGC 302215 32 100.0 35 ................................ TGCATCTCAAACACACCCGGACTATTAGTCAGAGG 302148 32 100.0 34 ................................ GTTCCGTGGTGCAGATAGGTGGGTTGGTGTCTAA 302082 32 100.0 35 ................................ TTCCCCGTCGCCAGGTCCTTCGCTTGCCCCAAAGT 302015 32 100.0 34 ................................ CCCGGCGGCACGGTGGCGCTCCAGTTTTCCGGTA 301949 32 100.0 35 ................................ ATTTCCAGAAGCCCCCAAGGTGAAGGAGGACGGCC 301882 32 100.0 34 ................................ GAGCGCGAGCTGACTGGCGAGCGGCTGCGGGATT 301816 32 100.0 35 ................................ TACCTATCGCGGCTGGCTCATCCATCCGCCTATAT 301749 32 100.0 34 ................................ TGGAATGGCGATGCGCGCCTTGCGGCCGCTTTTA 301683 32 100.0 35 ................................ CCACATTCGGTCTTTGCGGATGCCAATGCGGACGC 301616 32 100.0 36 ................................ CTGCAGGCGTTCGCTGATCGCCTCGACCGGCCGCAG 301548 32 100.0 34 ................................ CTCAGAAGCTCTCAGATGATGTTCGAGCATAGTC 301482 32 100.0 35 ................................ ACCTCATCAGACGGCCCAGCCGGCCGGGGCTCAAT 301415 32 100.0 34 ................................ GTGGCCGAGGCTATCAGTCGCGGCGTCGATACCT 301349 32 100.0 34 ................................ ATCGCCTCATCGGGGACACGAATACCCTCCATCA 301283 32 100.0 33 ................................ GCACCAAGTCATGTACGAAAAACGGCATGCCTC 301218 32 100.0 37 ................................ TGAGTATTACGATTTCAAATCGTCGCAGCATGCCATC 301149 32 100.0 34 ................................ AGCACATGGCCGGGGAATGCCCCCCGTCCCGGCA 301083 32 100.0 35 ................................ GACAAGCGCGCCGTTGAGAAGGTGGGAGACGAATT 301016 32 100.0 33 ................................ ATAATCAACGCCCAACCATTTGCTTGTAATCAT 300951 32 100.0 36 ................................ AATCTATCGAGGATTTGCAAGAACGGCAAATGAATG 300883 32 100.0 35 ................................ CACCAGGCGCGCGCCCAGAGATCGGTCAGGCCGGT 300816 32 100.0 36 ................................ CCGCGCTTTGTCGTGCTGGGTCATTTCAGCGGCCCC 300748 32 100.0 34 ................................ CGCGCGGGTCACACCCGAGCTTGGTGGCGCTGTC 300682 32 100.0 34 ................................ TTCGCTGGGCGCACGGCCTTTCGGTCGATATCGG 300616 32 100.0 35 ................................ CATGTGACATATTGGGTGACATTGCCGCGGCGGTC 300549 32 96.9 34 ............................C... CGACCGGATCATGGAAGAATACGCCGCGAAAAAG 300483 32 100.0 34 ................................ GTGCCGGTGCAGGCCATCGACGCGATCAAGGATC 300417 32 100.0 36 ................................ CCATGAGCCCCGCCCATTGTGGCGGGGTTTTGCGTT 300349 32 100.0 34 ................................ GAGCGCGAGACGGGCGGCAAACTGCGCCGACCCC 300283 32 100.0 35 ................................ ATCGACATGGCGGAATGTATCCATGCCGTGGGCTT 300216 32 100.0 35 ................................ ATCACCCTGGGCGACCGTCTGCACCAGGTGGTCAA 300149 32 100.0 35 ................................ CTCGCGCGACGATCCCATGGCCTCGGGCGTGGCGC 300082 32 100.0 35 ................................ GGCGCGGTGCCCCCGGCCTTCTGCGGGATCGGCAG 300015 32 100.0 34 ................................ TCAATGGACGCGCCCACGGCATCCAACTCATGCC 299949 32 100.0 35 ................................ AACAAGACGGCCGTCCAACTGACCACGGGGCCCAA 299882 32 100.0 35 ................................ TAGCTTGGAGCGGGCGTGGTCTGGCTTCATCTGGA 299815 32 100.0 35 ................................ CCTCAAGGAGGAAGGCTGATGCCCGCCCTTCGCCC 299748 32 100.0 34 ................................ ATTTGCCGCCTGTCCATCAGCCCCGGGTCGATCA 299682 32 100.0 36 ................................ GGCATAACGCGCTAGTTGCGCGTTATTGGCATCGTC 299614 32 100.0 37 ................................ ATCAACAAGGCGGTATCGTCGCCCTCATGAGCCGGCA 299545 32 100.0 35 ................................ TTCGGCCCGGAGATCCAGGCCGCAAAAGCCGCGCA 299478 32 100.0 35 ................................ TCAGCCGCCGTTACATTTGGCACCTATTTCGGATC 299411 32 100.0 36 ................................ TCGTGGCAAGAGGTTAAGTCCAATGAAAAAATCCAA 299343 32 100.0 35 ................................ TTCAACACCTGCATTTCGGAGGCTCTGTGATGGAT 299276 32 100.0 35 ................................ CTGATCGGCCCGTTCGATCATATTGATTGTAGCTC 299209 32 100.0 35 ................................ TCTTGGGCCGAGGTGAAAGCCAATGAAAAAATCCA 299142 32 100.0 35 ................................ CGCGCATCGCCATCGAGAACCCCGTCTGCATCATG 299075 32 100.0 34 ................................ CCATATCTGGCCGGGACGATCTGACGCTGGAGGC 299009 32 100.0 34 ................................ CTCCACCATAAATGCTGGCGTCCTGCCAATCCCC 298943 32 100.0 34 ................................ ACCAATCAATTCCGGCCAATCACCCGCCGAAATA 298877 32 100.0 35 ................................ GTCGCGCCTACCGCGAAAAAAATACTACGCTGAAA 298810 32 100.0 34 ................................ AATCTCGTTTATAATTTCCGCCTTGCCGCGCATT 298744 32 100.0 34 ................................ TGGACCATCGTGAGCGTCTTGTGCCCGGTGACGG 298678 32 100.0 33 ................................ AGCATCGAGATTGACCGGCTGGCCGAATGGCTA 298613 32 100.0 34 ................................ TGGACCATCGTGAGCGTCTTGTGCCCGGTGACGG 298547 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 129 32 100.0 35 GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Left flank : CGCCCTGGTTCTGGAGTTGAGATGCTTGTCCTGGTCACCTATGACGTGAATACGCTGGACACCGGCGGCAAGAAGCGTTTGCGTCAGGTTGCCCGAGCGTGCGAGGATTACGGCCAGCGGGTGCAGTTCTCGGTCTTCGAGATCGAGGTGGAGCCGGCGCAATGGACCCGGCTGAAGGCGCGCCTGGAAGGGGTCATCCGCCCCGAGGTCGACAGCCTGCGCTATTACTACCTTGGTTCGAACTGGTCGCGCCGGGTCGAGCATGTCGGTGCAAAGCCCGCGATGGATCTTAACGGCCCGCTGATTCTATAGTTTTTTGTCCCTGCGAACATGAAGCGCGCCGACTTTTGCGCCGAGGTTCGCATCGGGGCGGCTTTTTTGAAATCGTTGGATTTTCTTTTTTCTGCTCGCCATATCGGCTGACTTGGGGCAAGCGCAACCGACCCTTTCGCATTCGCAAGGAAGATTGCGGCATAACAACAGTGCGGTATAGGGAGGCC # Right flank : ATCGATGATGGCAAGAACATCTTCGCCCCGGCCTAGGCGGTGTCTTCATTTAGGCGATCGCTGCCATTGCGCAGGCGAGGTCGACGAATGCCTTTAAGGAGGCGACGGTTTTCTCGCATCGGAGCGCGATCCGGCGGAATCGTTTGAGGCGGTTGAAGAAGCACTCCACAAGGTGGCGTTCCCCGGAGAGCGTCCGATCCAGCGGTCGGCTTCCGGCGCGGCTTCGGTTGCGCTTGATCTGTGCGGTGGCGCGCAGGTCGCCGGCGATGAAGCGGCGCAACGCCTCGGTGTCGTATCCGGCGTCGGCGATGACATGGCCGACGCCCGCAAGGCCGCGGATCAGCCCCTCGGCCTGCGGGCTGTCGGCCCAATGGCCCGGCGTGATCGCGAACCGGACCGGGAGGCCAGGCGCGTCCACCGCAGCATGGATCTTGGTCGTCAGCCCACCCCGAGAGCGGCCGATGGCGTGAGCCTCAAGCCCCCGTTTTGCGAGGTCGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //