Array 1 40555-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYOJ01000018.1 Escherichia coli strain T0181B.E-13 NODE_18_length_101220_cov_33.0754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40554 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40493 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40432 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40371 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40310 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40249 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40188 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40127 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40066 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 40005 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39944 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39883 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39822 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39761 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39701 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39640 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39579 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39518 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39457 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57244-56056 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYOJ01000018.1 Escherichia coli strain T0181B.E-13 NODE_18_length_101220_cov_33.0754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57243 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57182 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 57121 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 57060 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56999 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56938 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 56877 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56816 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56755 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56694 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56633 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56572 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56511 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56450 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56389 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56328 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56267 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56206 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56145 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56084 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //