Array 1 50054-51923 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJM01000007.1 Cohnella faecalis strain K2E09-144 Segkk6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50054 32 100.0 34 ................................ GTAAACGCCTTGCGGCGGCAAGGCTACGATGTAG 50120 32 100.0 33 ................................ TTATTGAACGTGCAAAAACAAAAAAATATATAG 50185 32 100.0 33 ................................ GCTCATGCTGCCCCAATCCTGATTGACGCGAAC 50250 32 100.0 33 ................................ TGCAAGCAGTATTCGAACGCCTGACTGTGTAAG 50315 32 100.0 33 ................................ TCTCAATCAGCAGATCGAGCAAATGAACTATGA 50380 32 100.0 33 ................................ GCAATCTTAAAGATCGTCTTACTGAAAGTGGAG 50445 32 100.0 34 ................................ CATCCCATGTGGTGGAGTATTCATTGTTACCAGT 50511 32 100.0 34 ................................ CTCCGAATGCATTTTCAAATGTATATAGCCCATC 50577 32 100.0 34 ................................ TGTGATTTACGATTTAGGACTTGTGGAATAGTTA 50643 32 100.0 34 ................................ TGTGATTTACGATTTAGGACTTGTGGAATAGTTA 50709 32 100.0 34 ................................ GGCGATTTCGTTTGTCGCATTATTTAGCTTCGAA 50775 32 100.0 33 ................................ GCGTCCTCCTGACAAAACATCGTAAACCTATAA 50840 32 100.0 33 ................................ ACCGAAGCAGACGGCCAAGCCCAAAGAAACCTA 50905 32 100.0 34 ................................ AAATCCTGGATATGCCGGTTGCAAGCCTGCCACT 50971 32 100.0 35 ................................ TTTTCATATTCAGCACGTTCCCTTTGAAGCTGTGT 51038 32 100.0 33 ................................ TATTAGATCTACCGTCAACAGAAGCATAGCGTA 51103 32 100.0 33 ................................ GGCGTTCGTCGAGCAAAAGCTCTCGTACGCCAT 51168 32 100.0 33 ................................ GCTGCCAGCACTCCCGGATGTGGCGGGTACTTA 51233 32 100.0 33 ................................ CCAAATGGAATCCGATCACAGCATAACGAAGTC 51298 32 100.0 34 ................................ AGATTCGAAAGCGTCGTCGTATAGCCGGACGGTG 51364 32 100.0 35 ................................ AAAAGGTAGTTCGTGGATTAGACCTTGCGAGTAGC 51431 32 96.9 34 ......T......................... TCAAAAAGACTCTATCAAATATGAACATCGAAGA 51497 32 100.0 35 ................................ TTAAAGACCACAAACAAGAGCACAGCGCCGCCTAT 51564 32 100.0 34 ................................ TTTCCCTCGTTGTCCTTACCTAAGTAATTGGCTA 51630 32 100.0 33 ................................ ACACGCACCCGCTGCAGTAGCACTTGATATGCC 51695 32 100.0 33 ................................ ATATACATCAAATAATCAATATCACCTTATCAA 51760 32 100.0 34 ................................ GTATCGTAATTGGTGGCGCAGATTGATCTTGCTT 51826 32 100.0 34 ................................ CATTAGGACGCTGAGAGTTTTTTAAGTTCTGTTG 51892 32 84.4 0 ..........A.......TAAA.......... | ========== ====== ====== ====== ================================ =================================== ================== 29 32 99.4 34 GTCGCACCTCGTGCAGGTGCGTGGATTGAAAT # Left flank : CAAATAAAGAGGCCATAATGGACAGTAACTATCCATATGGCATACTCATGACAGATATCTTGCAAGACTTGTGTGAAAAATGAGGTCATTCAGCGAAACAGCATGATGATGCCGAACTCCCTAAATGATTCTCGGTTTCATAATGGGGGGGTGATAACATTTTTCCAGCATTGACTCAACCCTGCAACTCGGCCTATTCTGGTGTAGGAGAGCAAACAATTTAAGGTGGGAGGATAGGAAATCATCCTTCCTTGAATTACGATACGGCAGATTCTATCTATTCAACTTAAATCAGTACTCGGCTTCCGTTTTCTAATCAGGCGTTCAAAGAGGTGCGAACCCTAAGCTCACATAAAATTCCCAGGAGTTTCGCCCCCCTTACATGACAAGGGTTTGAAGGCAAAAGGCGTCTAAAATGCCTTGCAAAACCTACTGTACTTTTGGGGTTCGCACTTTCAGGGCGCAAATCCCTTATGTGGCAAGGCTTTTTACAAGCAACT # Right flank : TATAGCTTGCTCGTATCAGCAAGACGAAGACGTTCAATTCATTTTTGAAAACGCTTACAATTATCCGTGCAAATAAAAACCAAAACCTCCCGTGTAGTTCACCTTGGAGCCATGATTTTTGTGTCAATCGGCAGTAAGTCCTTTTTTTTGCAGGAATAAGGATTTACGTGTAAAACAAAAAAATGATATAACTATGCATAATGAAGCAATTGGGCTTTTTACCTATTGAAGGAGGGGATGGAAGTGAATGTAGAGGCTCCGGATTTGCAGAAAGTAGAGCAATGGATCGAAAGTGCCGGAAAAAATTTATTTGAACAATATCCGATCACCGTTGTGACCAGCGCCATTATCGGCAAGGATTTGCAAGATCATATGAATGGCGGCGAGCCTCGGATTTCGTCGATTCGCGGACATTTACGCTTCTGGTGGCGGGCGACACGCGGTGCGAAATACAAGGATGCTCATGATTTGAAAGTATGGGAGCGCCAGATTTTTGGAGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGTGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 60053-60874 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJM01000007.1 Cohnella faecalis strain K2E09-144 Segkk6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 60053 32 100.0 34 ................................ AAATTTTTCAAATTATTTGAATATGCCATGTTAA 60119 32 100.0 35 ................................ TTCCTTGCGGGGAGGAAACGGAATGGGCATCGTTT 60186 32 100.0 35 ................................ TCTATCTATCAAAATGTAACTGTAGGTAAAAATGG 60253 32 100.0 35 ................................ ATATGCCACCTACCTCAGATGTTTGGAGAGATCCT 60320 32 100.0 35 ................................ AGCAAGCGTTGAATCGTTTGTTTGTACCTCATTAA 60387 32 100.0 33 ................................ TTTCGAGTCGTTTTGGTTTTTTGCTCAAGCAAG 60452 32 100.0 33 ................................ TCAAATACGCCACGCCGATCCTTGTCCCAGTAC 60517 32 100.0 32 ................................ GTAACCGAGGAAGGCAACACGTACGCTCCGTA 60581 32 96.9 34 ...............................T GACGACGGCGTTGAGGTGGTTAGTGGTACAAAAA 60647 32 96.9 33 ...............................T AAGGATTGCGGGCCGACCCCGCATCAAACCCCG 60712 32 96.9 34 ...............................T TGGTTGATTAACATACCAAACACTGGCCGTCAAC 60778 32 96.9 35 ...............................T ATGGACACGGTAGACTCCCTGAGTAAGTCCACCTC 60845 30 87.5 0 ........................--..G.T. | ========== ====== ====== ====== ================================ =================================== ================== 13 32 98.1 34 GTCGCACCTTATACGGGTGCGTGGATTGAAAC # Left flank : AGTTTCGAGATCCAAGGAAGAATCGTCTCTTACGGATTCGATAGCTTACTGGCTAACGGAATTGAATCATAAAGTAAACTCGGTCAACCCCATCCAGATTCCTCATGCAGAGTATGATCCAAAACTCGAAAAAATGAGCCTAAATCAGTTAAAGGTGCGGGAACGGGAGGGCGGCAATGAAATTTCTCTGCTGACTCTAACTTTTCAATTGAATCAGTTGTTAATGCTGGTGAATAACCCGCTTCTGTTCCCGCATCAGGCATATGCGGATTTGTTTAATCATATTCCGATTCCGATCAAGTAATCGGATTTGGATAATTCATAGTGAATCTGGTGCGAACCTTAAGCTCACATAGAATCCCCGGGAGTTTCGCACCCCTTACAGGGCAAGGGTTTGAGGGCCATGGGAATCGGAAAGGCCTTCTATAACTTGCAAAAATTTTGGGTTTCGCACTTTTAAGGCGCAAAGCCTTTATGTGGTAAGGCTTTTTTAAGCTGCT # Right flank : CGGCTACACTAAGTTGGACAGAAAAAAAGAGGGGGTAGTAAAATACAAGAAAGAGCCGAAGGAGCGGATTGCTGTTGTCGCAGTCAAGACGAACGTTTACACCCGAGTTTAAGAACCAAATGGTGCAGTTGTACGAGAGCGGGAAGTCCAGAGCGAGCCTCGTGAAAGAGTATGATTTGACCGCATCCGCATTGGACCGTTGGATCAGCCAAAGTCAGCGGACAGGCTCATTCGCGGCCAAAGACAATCGCACACCCGAAGAGAACGAAATGTTGGAATTGCGTAAGGAAAATCAGCGGCTGAAGATGGAGAACGATATTTTAAAGCAAGCCGCGCTGATTATGGGACGAAAGTAAATGTGATTCGCAATAATGCGCACAAGTACTCGGTATCAGCAATGTGTAGCGTCCTGCAACTGCCCCGAAGCACGTATTATTACGAGCCTGTGCCTTCACCCGACCCACAAGAGCAACAACTGGAAGAAGTAGTGATAGAGATCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //