Array 1 1008-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000039.1 Paenibacillus campinasensis strain 7537-G1 contig00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1007 32 100.0 34 ................................ CACAACTTTTTACGCGGACAACAACGCATACTTC 941 32 100.0 35 ................................ ACTTATAGATGAATTGCATGCCATTGAGGACAAAA 874 32 100.0 38 ................................ GATTTGCTACAGCCTTGGCAACGGTCATGAATTACATT 804 32 100.0 35 ................................ ATTGACCAAAAAGGCAAGCATTTGTACCTCTCCAA 737 32 100.0 35 ................................ ACCTTGTATAGATCCAGATTCGGTGTCTGACTTGG 670 32 100.0 35 ................................ CCATCACCCGCTTTGCAATTAGTAAGACCTGAAAC 603 32 100.0 33 ................................ GCGTCCCATGCCGGATGATGTGTCGTATACATG 538 32 100.0 37 ................................ CATCAGAGGAAGGGATCCCGCTCTGGAAAGACGCCGC 469 32 100.0 34 ................................ TTTGTAGCAACAGCATATACTTCAGAACCCGGTT 403 32 100.0 34 ................................ ATCATATCGTATAGACTTTGTGCCTCTTGTTGAT 337 32 100.0 36 ................................ GCACATATGTACATTCTACCAGCGCACACACGCAAA 269 32 100.0 36 ................................ GTTGAATCTCGGCTTTCCGTCTTCGTGCAGCTTGCC 201 32 100.0 37 ................................ GACATGGCCGGCACGTATGTAACGGATAAGGCGGCGG 132 32 100.0 35 ................................ ATTGCGTAGCCTTTCGATAAGCCGCGCGAGCAACT 65 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 100.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TGTGGAATCGAGATCCGGAGGACTGGCTGACACGTGATCAGGACAAAATTGTGGATTACATCAAGCAGATGAAAGCCTCGGGCTCGATCGTTATTCTGCATGAGTCTCAAGCAGTGGTAGATTCGCTTCCGGAAATTATCACCTACCTCAAGAATCAGAATTTGAGTATTGTCGGGTTGCGATAAACGGACATTTCATAACAAGGCGATAGACTGGCGGATGCAAGATTCGTAGCCAGGAACAACATCCGATGGTTGAATAAGATGGTTATCCTTTTGGCGGTGGAAACACGGTTTAAAGAGGATAACCTTTTTTAGTTCAAGGGGGTCCTGGTGCGAACCCCAAGCGAACATAAAATCCCAGGGAGGTTCGCACCCCGCGTCAGACAAGGGATAACGCGATTTGCATGGTAAATTCAGGGTGTTTATAGTAATCTAGAAATGAGGTTCGCACTTTTGACCCGCCAAACCCTTGAATCACAAGGCCTTGTCAGGCGGGCT # Right flank : TGTATCAGCTGAATTCTTAATTCGTACACTTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1430-1126 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000040.1 Paenibacillus campinasensis strain 7537-G1 contig00040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1429 32 100.0 36 ................................ CATACCAGCAAGCTCCAAGCGAAGTCGATTACTCAA 1361 32 100.0 34 ................................ ATAAACACCAGAAGTACACCGAACCACAGTGACT 1295 32 100.0 38 ................................ ACCGGAGTGATGCTTGGAGGCTTTCGTAGGGGCGAATT 1225 32 96.9 37 ...........................A.... GTACGCCGATTGGATTAACCGTCCCACGGTGTTATAC 1156 31 93.8 0 .............-.....T............ | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 98.1 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : AAAGGGCAGTCAGAATCATTTAAGACTCTGGCGGCCG # Right flank : AGGCGCCCAGGCAAACTGCCCACTCGCTTTACGGCGTACTCCATGTGAGCGTATTGAAATTGTGCTCCGGTCCCGAGGCTAACAGGCAATCAAATAAACATGTGTGAATGAAGAATGGCGCGAGTTTTGCGTTATTCTTTTTTTCATACTTAGTGATGTTTCATCGTGTGAAGGGATGGTCTATCGTCCGGAAGGTGAGGGCGGCTCTAAGAATGCCATGTCTTTTTTTGGTACAATAGAATGCAAGTTATTGGGCGGGGGAGGAGAGAGAGTATGATTTATTTAAGGAGTTTTAAGATTTCCAGTTATACAGATCGAAATCCCAACATATATCCGGATCATGTGTTTAGGCATATCGCTGGCGAGGTGCTCTGGTTTGATCGAATTACGGTGCTGTACGGCAACAATGGCAGCGGCAAATCGACTTTGCTCAATGTCATAGCCAATAAGTTGAATATTAAGGGTGCTGAGAAGATGTCCAGTCATGGGCACAGTATCTA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12117-10730 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000038.1 Paenibacillus campinasensis strain 7537-G1 contig00038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 12116 32 100.0 35 ................................ ATCGCGTTACCAAGCTGCTCGATATTCGTATTGGA 12049 32 100.0 35 ................................ CAGTCTCCTGTAAACACACCCGCGATAAAATCAAC 11982 32 100.0 34 ................................ CATCCAATTTCAATTTGACGAATCACCCTAACGC 11916 32 100.0 37 ................................ CCCGTACCGGATCGCATACGGATTCTCAACGCCAATC 11847 32 100.0 40 ................................ AAGCAGCTTCAACGGGTCCTCAACGTCCTGCTCCGTAATC 11775 32 100.0 35 ................................ TTAGAAAAGTAACTCCGCAAGTCTCGCACACGCAG 11708 32 100.0 34 ................................ GATCTCCACATAAAAAGGGACGACACCGGAAAAG 11642 32 100.0 35 ................................ ATTTTCAGCCGCTCAAATCCGGACCGGTCGAACTT 11575 32 100.0 37 ................................ GCAAAGATGTGGTGAGAGGATGATATGATGACTGCAC 11506 32 100.0 37 ................................ TTTTGTGGTAATCGCATCGAACGTTACCTTTGTGCCT 11437 32 100.0 36 ................................ AAAGTTAGGGCCCTTTTGCTCGGTTACTTTACGCTC 11369 32 100.0 36 ................................ CTTTTGGGTCTAGTGGTTGTACGTTGTAAATCGGTG 11301 32 100.0 35 ................................ TTCGCTTTATGAAGCAATTGAAAATTACAATAAGT 11234 32 100.0 36 ................................ ATTTAAATAAAATCAACATTACTATTATCAAATAAG 11166 32 100.0 35 ................................ TCAACACTGGCAATCAAGCCGCCCTCTCCATCTAA 11099 32 100.0 34 ................................ CTGATCAAAAGGGGGCGGTGGGAAACTACTTTTT 11033 32 100.0 37 ................................ TGTCCGATTGTCGGTAAACGGACGGTTTGATGCTTCG 10964 32 100.0 37 ................................ TCTGCATTTTGGGCAATAGTAAGATTCCCCGAGCATA 10895 32 100.0 34 ................................ CTGATTAGCTTAGGGACGGTAAAAAATGGTTTAG 10829 32 96.9 36 .......................A........ TTGAAAGCCAATTATACTCACAAAGTCCAAGAGATT 10761 32 71.9 0 ..........G......CC.A......ATTTG | ========== ====== ====== ====== ================================ ======================================== ================== 21 32 98.5 36 GTCGCTCTCCATGTGAGAGCGTGGATTGAAAT # Left flank : GATGAGTATCCGCCATTCTTATGGAAGTAGGTGAGCCCTAATGCTTGTACTCATTACTTATGATGTTCAAACGTCTGGGGCAGGAGGTGCTGCAAGGCTGCGTAAAGTGTCCAAGGCGTGCCAGAATTACGGGCAGCGGGTGCAGAACTCCGTGTTTGAGTGCATTGTGGATGCAGCCCAGTTCACTGCTCTGAAATTGGAGTTGACCCAGTTAATTGATGAAGAAAAAGATAGCTTGCGCTTCTATCGGTTAGGCAATAACTACAAAACCAAAGTAGAGCACATTGGGGCCAAGCCGGCGATAGATTTAGAAGAGCCGCTTATCTTCTAGTGGTGCGAACCCCAAGCGCACATCAAATCCCTGGGAGGTTCGCACCCCGCGTCATTAAAGGGTTTGTAGAGATTTTGGCTGAAATTAATGAAAAAATTCGTGCTCGCAAAGTAGGTTCGCACTTTTAGGCATGCGAAGCCTTGTGGCTCAAGGCTTCGCAAGGCCCGCT # Right flank : GCTCCAACCTAATCACCAGTGCTTGAAATCATAACAGGCTTGAAGCGAAGGGGAAGAGGGAGACTGGAGAAGCAAAGCGCTCGCCTTTGTCCCCGGATTTCAACCGCTGAGGCGGTAGTAATCAAGAAATCTGGGGGTGGGCAGCGATCGGAAGTCCCCTCATTCCCCGTAGCGGCATACTTCACTGAAAATCAAGCACTGATCTCTGATTTGAGCTCTTTATTTTGATGAAAATGGATGAGCGGTTGCACGCCATGCGAGACGTGGTCTTGTGTATATCGCCCATGGACCTGCTAACAGCGTATTGCCATTACCGTTAACACTAAGGTAGTGAAAAATAGCACATGGCTTACAAAACAAAGCGTGTATAATCATCAGGTAAGCGAATTTGCTTTCGGCAAACTCGTGATTTTTTTCACTTATATTGTGAAAAAAATAACAAACTACGAGAAGGAGTAGGTAGCATGAGACATCTTAGGGGCAAGTACGGAAGAAAAAGT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 21618-20642 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000038.1 Paenibacillus campinasensis strain 7537-G1 contig00038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 21617 32 100.0 37 ................................ GGTGCGTTCGTGTTGAATATCGCTTGTTGGCGCAAGA 21548 32 100.0 37 ................................ TGTTTTGCAGGCACAACAATCTCGTAATTCCCGCCGG 21479 32 100.0 33 ................................ TCCGCACGCTGAGTACGCTGACTCTACCTCCAT 21414 32 100.0 35 ................................ GCGTCTCCAATTCGGCCAGCACGCGCGGCATGATA 21347 32 100.0 36 ................................ CGTGACGTTAACGTAGAAAGCGCGCATATCCGGCAG 21279 32 100.0 36 ................................ GATGCCCTCAACAAGATCGCATGGGAAGATGACAAC 21211 32 100.0 33 ................................ CTAGCTGTGATATGGCTGCTGTTTATCATCCGT 21146 32 100.0 38 ................................ GTTACTCCTGATCCTGCTGCCGGTATTTCAAAGTCAGA 21076 32 100.0 38 ................................ GAAGAAATCGAGAGATCGTGATTCATCGAATTTGGGGC 21006 32 100.0 33 ................................ ATTGCGGACAAAGGTCAGCATTTCATTCAGCGT 20941 32 100.0 35 ................................ CTCAAGATCAAATAAATCAAGTTGTACAGGACTCA 20874 32 100.0 35 ................................ TGGTGCTGCTGGCATTGCATCAGGTACAGCAGCAT 20807 32 100.0 35 ................................ ATTGTGCAAAGGAAGGATATTGAGCAATTGATGCA 20740 32 90.6 35 .............TAA................ TGATAGTATTTGGGTCGAGTGGCATCCGCATTAGT 20673 32 78.1 0 ..T.........GTAA....T......A.... | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 97.9 36 GTCGCACTCTATACGGGTGCGTGGATTGAAAT # Left flank : CTCCTGCATAAACAGCTTCACTAACCGGTCAATCCATTGCTCCTTAATGGTGATCGTCGGTGCTAGAATTAATGTTGGCTTATTCAGCCGCCTTATGATTTCGAGTCCAACCACGGTTTTGCCTGATCCCGGAGGTGCCACAAGATGAAAATGACGATTGCTCAAATAGCGGTCAAGCTGGTCCAGCACCTTCTGCTGATAGCTTCTCCAGGGATAGATAAAAGCGAGATTTGCTGGGAATGATTTCATAATGGCATCCTTTCTATGGTGGGTATGCTGTTTACATTTTACCAGAATGCAGCCTATCATGTTGAGGAATACCAGCTTCCCTGGTGCGAACCCCAAGCGCACATGAAATCCCTGGGAGGTTCGCACCCCGCGTCCCGCAAGGGGTTCAGCCGATTTGGTAGAAAATAGGGGGAGGTTATAGTATGCTAAAAAGGAGGTTCGCACTTTTGAACTTATAAAGCCTTGTACAACAATGGGTTATAAGGTGTGCT # Right flank : TACCCGCATTGTCCGAATGAAATCGTGCCTGGTGAACATTTTGTAAGTCGCAAATTCTTATCTCCATGCAACCCAAAAGGTTGCTTTTTTGTGATTTTCGTAAAACTACATTAATAGTAGTGCTAACACGTCAGTTTTTCAGAGAGAATAATTACAAGGTGGCTAAGTCAGAGGGATAGATCTATCTTTTTACCTATTTATTGGTGAAATCTGGCGAATTATATGGTAAAATGTAACTAATTGTTATGTCATTTCGCGAGGAGATGTGCTTAATGTATATTGCACACGTTCGAGAACTCGATAAAGAAATTCAACCAATAAACAAGCACCTGCTTGGAGTACAACGGCTGGCGGAACAGTTCGGGGAAAAGCTGGGCCTGAAACATGTCGCTGGGTTAGCCGGGCTGCTCCATGATCTGGGAAAGTATAGTGATAAGTTCCAAGAATACATAGACATCGTTGCCTTTCACCCTGAATTGCCCCAGCCGAAGCGTGGTGAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 223800-223434 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000038.1 Paenibacillus campinasensis strain 7537-G1 contig00038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 223799 32 100.0 38 ................................ ATACCCGTATTGACATGGAGGCAACTGGCCGAGACATG 223729 32 100.0 35 ................................ CGACAAGAGTATCACAATGAGATATATCGGAATGG 223662 32 96.9 35 ..........G..................... GTTCCATTCTTTCCATCTCTGTAATCCTGTCTCTG 223595 32 96.9 34 ..........G..................... TCCTGGAGGTGGGAAGTGGAGCGCTGGCACTATT 223529 32 93.8 33 ............T...........C....... ATGATGTACAAGTACAACCAGGGTCAGGACCCT 223464 31 78.1 0 .............C.......ACA.G..C.-. | ========== ====== ====== ====== ================================ ====================================== ================== 6 32 94.3 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CTATTAATGCGGAAGTTTAACACTCGCCGCGGCG # Right flank : GGATTTAACCGATCTATCCCATTTCTGTTAGATCACCTCATCCCTCTCCATCGCTACTTATCTCCCACACGCGACCGTTTCCTTTGACCCTAAAGCTCTCCTAATCCCAGGAGGGCTTTTTTCATTTGTTAACAAATCCCCGCTGTTTCCTCAGAATCTATTCATAAAATTAACCAACTCCTAAAATGCGGATAACATCCAGATTACAATTGAAAATTACAGTAGAGGTATAGACGTCTAGACAATTTCGATGAAAGGAGAATAACTTGAACAGGTTGCAGGCCAGTCCCAAATACGGACTACTGATTACAGTTCTCATCTGGACCTTGTTTCCGATCTACTGGATGGTGATCGTGGCCACACAGACCGATTTGTTTGCGGATGTGTCGCTATTCCCCCGTTCTGTTACGTGGGAGCATGTGATCAGTGTTTTTACAGAAGAAAATTACTTAGGGGCGTTAATCAACAGCTTTACCGTTACAGCCATCTCCTTGCTGATC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 747-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000041.1 Paenibacillus campinasensis strain 7537-G1 contig00041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 746 32 100.0 38 ................................ GTTGCCAAAAGGGAATTAACGTAAAAGATTCGGCAACA 676 32 100.0 34 ................................ CTTGCCGTTGTTTTCGGCGAGGAGGGAGATTGGG 610 32 100.0 38 ................................ TCTGATTATTTCTTAATAGTTTGCAATCTGGCAAACTA 540 32 100.0 36 ................................ TTATCGATTTGCACAGCGCAATCTATAACGCGGGCC 472 32 100.0 35 ................................ TCTGTCCGACAACTTCTTAGCAAAGGGTTTAATAA 405 32 100.0 37 ................................ TAGGTGATCACGAATTTCATCAAAATAATGAGACGAT 336 32 100.0 35 ................................ CCTGAAGTGATGTGGGGTCGTGGATTGAAAAGAGC 269 32 100.0 33 ................................ GTTCGGACTTACAACCAATCTGCTTCTCACGGA 204 32 100.0 36 ................................ TCCATTTCTTCAAACTTGGTTACATAAGCTGCTGTA 136 32 100.0 37 ................................ TCTAATTCTTGATCCCATGACGTTCATTGACTAAACA 67 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 11 32 100.0 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TATTCGTCTGCGAAATCGGCTGAATGGGGATTGACCAATGCGATTCGCTTGGAGCTGGCTCCGAAGAACATTAGCGTTGCCGGCCTGCACGTAGGTTTCATCGATACAGCTATGACAGCTGGTATTAAATCTCCGAAGTTAGACCCGGCGGATGTGGCACGGATAGCTATCGATGGGATCGAAGCAGATCTCTATGAGATTCTAGCTGATGACATCAGCAGACAGGTACAACAAGGGCTTTCCGGAGGCGTTTCCGCGCTGTATCCTGCTTTGAACTAAGAGCAGTTCTGCTGTTAGTGCTCTGGCATGATAGTTATCATATGGAATTCACGGTGCGAACCCCAAGCGCACATAAAATCCCTGGGAGGTTCGCACCTCGCGTCCCACAAGGGTTCCCGGGGATTTTAGTGGAAAATATGCTCAATTTATAGTACCTTAAAAAGAGGTTCGCACTTTGTGCCTTCTGAAGCCTTGTGGGACAAGGCTCCAGAAGGTACGCT # Right flank : TTAATTCCGCGATTTCGGCCTGCAGGCGTTCGAGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 7083-6780 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000041.1 Paenibacillus campinasensis strain 7537-G1 contig00041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 7082 32 100.0 32 ................................ CGACCGTGCTCGAATACTACGAAACGGTTGAG 7018 32 100.0 36 ................................ GTTGGGTATGGTTAGGTATGGTTTGGTTAGGTTGGT 6950 32 100.0 38 ................................ CCTGGTAACTGACAATGGTTTTTGGGGAGACGCCTCGA 6880 32 100.0 37 ................................ ATATCGCGTTAGGTTGAAAGGAGGCATTTCATGGATT 6811 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 99.4 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CTAGCGCGATGACAGCGTGATAGGCGAACGTTAGGAT # Right flank : TATCCCTCCTTGGGTTTATAGGGCTTCCCTAGCGCGATCGCACTCTACTCCAACCCGAGCCAGCTTGATACGGGAATCAGCACGGTTGATACGGCTTCGTTCAGTCCAGGCAACTCGGGGTAGAACACGATCAGACTGTATAGGGTCGCGGCAGCGAGGCTGAAGATGGCGACCCACGTTTTTTCTTTACGCTGCTTCTTGCGCAGTTGCTTCCATTCAAACCCAATCACGATAGCGGCAATAAGAAAACCATAAGCGAGCTGCAAGCTAGGCATGGCTCATTCTCCCCCCTCTTCGGTGGATAATTTGGATGGGACTCGCATCATGCCGATGCGTCTCATCACGAATTTCGGGTGAATATCGATCTCAAGATTCTGGAAGATCGTCTCCCATTCGTCTTTCACACGATTGAATTCATGCGGATATTTTCGGTGAAACGCGTCGGCGAAACCGAAGATGTCCGCTTGTTGCTGCTGCGCGTATTGGATGGTCTCCTTGAG # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1212-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBY01000042.1 Paenibacillus campinasensis strain 7537-G1 contig00042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1211 32 100.0 35 ................................ ATTTACTATGGCTTTTGTTTTTACCTACATCAGAC 1144 32 100.0 39 ................................ CAGGGGAGGAAACAACATGAACAACGCCATATATACAAA 1073 32 100.0 36 ................................ AAGGAAGAGCAATCGGGAACGGAGGTCCTCACATCC 1005 32 100.0 33 ................................ TTTCGCTCATATTATCAACCGTTTAACAACCGC 940 32 100.0 34 ................................ TTTATTTCGCTAATCGCCGCTCGGCCAATATCTT 874 32 100.0 36 ................................ GAAGCGATTTGAATCAAGACGTTCTCTACAGAAGAA 806 32 100.0 35 ................................ CGGCTCAATGTCCTTCAAGCTGCCGACGTCGTCCA 739 32 100.0 35 ................................ AACAACTTGGCGGCGCTACGATCGGCGGGGCAATG 672 32 100.0 38 ................................ TTGAATGATGGGGAAAGGGCAACAACCAAGAAGTTCCA 602 32 100.0 37 ................................ GGGTCCTTTACGTCCTGCCCGAGATGTTTATGAGATC 533 32 100.0 36 ................................ CCTTGCCGTGTTTAACCGTCAGGGAATCCTACCATC 465 32 100.0 36 ................................ ATGAACACCAGTAACACTCCAAACCATAAGGATCCC 397 32 100.0 35 ................................ ACCCGTTTTGCCTTTGAAGAAAATGAAGAACATAT 330 32 100.0 34 ................................ ACCACTTTACAGCTCTATTATAGAGCGAAAAATT 264 32 100.0 33 ................................ CAGGCATCACAAACAACGGTTTATACAAAATCG 199 32 100.0 36 ................................ ATTGCGGGGTAAGCCATATGTCCTGCATATGGCTGT 131 32 100.0 35 ................................ AATGATTGATAAATACAAGTAAATAGAGCATAAAG 64 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 18 32 100.0 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCGGATACAAAGACAGTGCTGCTGCGGGAGTAGCAGCACTGAAGTGGACCCTGGGCGGCCTTCGAACGAGACGTTCGGGGGCCGCTGTTTTGTATATAAATGATCCGCCTTGAAAATCACTGATGTAGCTGTCAGTGATTTTTCTATATGTTTGTAATAGAAGTCAATAAAGGAAATAGAGGGAGGGTCTTCTTGCAGATGCGATCTTTGTCCAGCTACCCCTGGGCTGGTAAGGGATTGCGAGATTAGCAGTGCCGGAGCGCAGTGAAGGGGTGCGGTGGGCTTGTGACGGACTTCCATGGAAACAGGAAGATCAAATAAAAGGGCCTTGAGTGCGAACCCCAAGCGCACATAAAATCTCTGGGAGGTTCGCACCTGGCGTCCTGCAAGGGTTTTCGGCGATTTGAGTGGAAAATATGCTCAATTTATAGTACTTTAAAAAGAGGTTCGCACTTTGGGCTTTCTGAAGCCTTGCTGCATAAGGCTGTATAAGGCGGGCT # Right flank : TTGAAACGCCTATATGATCATAAGGCTAATAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //