Array 1 5646615-5647064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUY010000001.1 Klebsiella oxytoca strain CPO119 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5646615 28 100.0 32 ............................ CTGTAGTTATCCGCATACGACTCAAACGATCC 5646675 28 100.0 33 ............................ ATCGAACGCCTGGACAACAGCAACGATGCCAAC 5646736 28 100.0 33 ............................ GGTAATCAGCGACCGGCACCACATCAACGCCGA 5646797 28 96.4 32 ...............A............ AGAATCCGCTGACCCAGCTCATCAGGTAACGC 5646857 28 100.0 32 ............................ GCGAACTGACCCATGCCGTGATGCGTGATCTG 5646917 28 100.0 32 ............................ TCCACAGAATACGCCTGTGTAAATCCGATCAT 5646977 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 5647037 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTTGGGGCAGGGCGCTATTCCATTGGCGGAAACTCGGCCTGGCGCTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCAGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5660324-5662335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUY010000001.1 Klebsiella oxytoca strain CPO119 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5660324 28 100.0 32 ............................ CTGGAAGAATGTCAGAACTGGCAACCCGTACT 5660384 28 100.0 32 ............................ AGGCGCTCACGGCGAGGCCAGTATTTTGCTGC 5660444 28 100.0 33 ............................ CGCTACAAGGTATCTTCCATGATCGATCGGAAT 5660505 28 100.0 32 ............................ ACAACGCACTCGAGCTCTTTTGCAAGGTTCTT 5660565 28 100.0 33 ............................ GATGATAATTTCTATTCGTGGTTTGGCAGGGAG 5660626 28 100.0 32 ............................ ATGAAGGAAACGGGGTTCTCCAGTCAGACAGC 5660686 28 100.0 32 ............................ GTATACAGCCATCAGCCTCTGACGGGCCGGGC 5660746 28 100.0 32 ............................ GCGTGATGCGCGGTTTGCTTCCAGCAAGATAG 5660806 28 100.0 32 ............................ ACGCATCCCCCGCAGCTCGTCGGCGCTGAAAT 5660866 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 5660926 28 100.0 32 ............................ AGTGGGTTATTAAACTGTTTTTTATAGTAAAA 5660986 28 100.0 32 ............................ GCGTACGCTCCGCGAACCTTACCAGCAAGTTC 5661046 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 5661106 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 5661166 28 96.4 32 ..........T................. TCAGTGATAGATATCTGTAACCGGGCGCTGAG 5661226 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 5661286 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 5661346 28 100.0 32 ............................ ACAAATCTAGTCACTATATATCAATTACTTAA 5661406 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 5661466 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 5661526 28 100.0 32 ............................ TGAAAAACGAGGTCCAATATTGGCCCATGTGC 5661586 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 5661647 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 5661707 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 5661767 28 100.0 32 ............................ GGCTGCGTCGGGACCCATCACATCGCCAGCAG 5661827 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 5661887 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 5661947 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 5662007 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 5662068 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 5662128 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 5662188 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 5662248 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 5662308 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGAGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5670765-5671033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUY010000001.1 Klebsiella oxytoca strain CPO119 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5670765 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 5670825 28 100.0 32 ............................ TGAATCCATACATGGGCCCGCTGCGGCTATTG 5670885 28 100.0 32 ............................ AGAGAGGTGCTTCCGCATGTTCCTGATGCGTG 5670945 28 100.0 33 ............................ TGTGTATCACCGAACGCAACAGCCTGATCACAA 5671006 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCACTATCTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGGTTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //