Array 1 376771-377329 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MWRS01000003.1 Staphylococcus intermedius strain 14S03302-1 NODE_3_length_405094_cov_51.8762_ID_5, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    376771	    36	 100.0	    29	....................................	AACGCTTGTGCACTTCCACCGCCAGCTTT  	
    376836	    36	 100.0	    29	....................................	TTCAAATGAAAAGATACCTTATCGCGAAT  	
    376901	    36	 100.0	    31	....................................	AAAGGTGTGTTCATGACTGCAAAAAACTCGT	
    376968	    36	 100.0	    29	....................................	ACAGAATCGTTAGTATTGCGTCAAGTTTG  	
    377033	    36	 100.0	    30	....................................	TTTAACAATTAAGTGAATTCCATTACCGGA 	
    377099	    36	 100.0	    29	....................................	TGAATTTTATAGCTTTTCTATTAGGTAAA  	
    377164	    36	 100.0	    29	....................................	GGAATTTGATTATGGAGAAGGAGATGAGT  	
    377229	    36	 100.0	    30	....................................	TTTAGTAGAAGTAAACGAAGCATATACGTC 	
    377295	    35	  86.1	     0	.......................T...T.-.G.C..	|                              	
==========	======	======	======	====================================	===============================	==================
         9	    36	  98.5	    30	GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	                               	       

# Left flank :   TCACTCAACAAAAGAAAACATTTTGATTGTATTATTTCCGGAGTCTCACCTCGGTATTCACGATATTAAAGTATTTATGCAACTTTTAAAGAAGTATCGTTTCACAACGATCGTCTTCACCAATCATCCTTCTATCATCATAAATGAAGAAAACATATTTCTTTGTAAAAGTAATAAAGCGTGTCATGACATAGAAAAAATAAAGGAAGAATTATCGTTATTAATTCCAGAAGAAATGGTAAGTCATCAATTGACTAATATGATTGCATATCACGAATTTTTAGGTGAAAACCTTTCTGAGTTTGAAAGATATTTTAAGTTTATAAACCATTACAATTAAGTTATACTTAATTCAATGATTGACAAGTAAGTAATGACTATGTGACTTACTTTGCGATTGAGTTGGGTAAGACGATTCCTCGTTTTTTATGTTTTACTACTTCTAATAGTGTGAAGCCTCAATTCTCTCCAGAATACAGTTAAGAATTTTGAGATTTGAG
# Right flank :  CCCCACTTTTAAATCAATTACGAACTATATTTACTGCCCTCACTATCTTTTAACTTCAATATAAAGGTATGGAGGGGCATTTTTATTTACGCGAAATGTCCACCAACGTCCCTTTTCCATCTCCATGTTATAATAGCCACAAATGCTCATTAAAACTCAAAAGAAGGTAGGGGAAATCTATGGAAGCAATTATTGCACGACAACCGTTCCAATTATCCGAGGGACAACAGTTTGAAAAGGTCGCACGTGATATACCTACACCAGAGGGACACGATGTTTTGGTAAAAGTCCATGTGACAGGGGTGAACCCGGTCGATACGAAAACGCGTCAAGCGCCTCTCAATGCGAAGGAACGTGTACTTGGCTATGATGCAGCAGGCGTAGTCGAAGCGGTTGGTGATGAAGTTACGGATTTCAAACCAGGTGACCGTGTGTACTATTCCGGCTCCAATCAACGTGATGGTTCCAATCAAACGTATCAGCTCGTAAATGAAAATTAT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//