Array 1 2561-1437 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCPZ01000318.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE1000 HEIDELBERG_S8_trimmed_contig_334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2560 27 93.1 32 --........................... TTCCAGAACCGTTTGACTTACTGTGGCCATTA 2501 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2440 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2379 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2318 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2257 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2196 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 2135 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 2074 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2013 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1952 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1891 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1830 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1769 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1708 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1647 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1586 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1525 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1464 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1662 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCPZ01000036.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE1000 HEIDELBERG_S8_trimmed_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 27 93.1 32 --........................... GGGAAAAATCAATAAAATCAATGATAAGCAGT 60 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 121 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 182 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 249 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 310 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 371 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 432 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 493 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 554 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 615 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 676 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 737 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 798 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 859 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 920 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 981 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1042 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1103 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1164 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1206] 1206 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1267 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1328 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1389 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1450 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1511 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1572 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1633 29 96.6 0 A............................ | A [1659] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //