Array 1 2058769-2060384 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFG02000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FDAARGOS_315 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2058769 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 2058831 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 2058892 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 2058953 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 2059014 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 2059075 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 2059136 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 2059197 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 2059258 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 2059319 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 2059380 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 2059441 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 2059502 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 2059563 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 2059624 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 2059685 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 2059746 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 2059807 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 2059869 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 2059930 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 2059991 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 2060052 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 2060113 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 2060174 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 2060235 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 2060296 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 2060357 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2076667-2078564 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFG02000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FDAARGOS_315 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 2076667 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 2076728 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 2076789 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 2076850 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 2076912 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 2076973 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 2077034 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 2077095 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 2077156 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 2077217 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 2077278 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 2077339 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 2077400 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 2077461 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 2077522 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 2077583 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2077644 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2077705 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2077766 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2077827 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2077885 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2077946 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2078007 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2078068 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2078129 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2078190 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2078251 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2078312 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 2078413 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2078474 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2078535 29 93.1 0 A...........T................ | A [2078561] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //