Array 1 110559-111134 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 110559 29 100.0 39 ............................. TTTCCCTTATCTCATACATTGCCGATCACCAATTGTATG 110627 29 100.0 43 ............................. CTGGTAAATGGTGGGTCGGTCGGTAATACTAGCGAGCAGCAAA 110699 29 100.0 41 ............................. AGATTACCGTCAATTCTATATGTAACTACTGCGAACCACCA 110769 29 100.0 39 ............................. ACGTTGCCTGCTCGACTGATATAATGCCATCTCTAACCG 110837 29 100.0 37 ............................. TGTCCAATTCTCTTTTATGTCTTTTGAAAACAAATCA 110903 29 100.0 36 ............................. CCCTCTTCAAAAACGCTAACAACCTCAGATATCCAA 110968 29 100.0 37 ............................. TTGTCCATCGGGTGCAGCACCCATGTACATTTTTGTG 111034 29 100.0 43 ............................. GACTTCAAGGATAACAAAATCGCCGAGGTTGGTTTTCTGGGCA 111106 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= =========================================== ================== 9 29 99.6 40 GTTTCCGAAGAACTAAATAGTATGGAAAG # Left flank : TTTCATTTGTAGAGTTGGGGTTAATGCATTGAGTACTCGAGGATTGAAGCACTGCTCGGGGTCGAGATTCAAAAAACAAGCAATAATGAGAAAGTAAAACAAGAATAAGACCATAAAAACTGATTTAGTTTTCAGATTACCCCGCCAGTAGTAATTCCCTGCCAATTGAATACATTTGAAAACTGGGGGTTCTCATAAGTCTAATTAGGGAGTGAAGGCGGGAGACCCCAAAATTGGATAGTCTAGGAGGTCTAGTTAAGCATTGTTTTTGGATTCTCTTGGTTTTAGGTAATTTTTTCATTTTCAACATGCTTCGATTTCTTGAATTCTCGTTTTAACTATTCACAATCCTCCACTCGTTAGTGAGAGAGTTTTCGTGAGTTCTTCATTTTAGGGTTGGGTTTATAAAGGGAGTGCAGTAGCACGGGTTTCCTGAAGGGGTAAATTATTTAAGCCTTGGGGAGGGAGTAATGAAGGAAAACAACCAAAAAAAACCCAAA # Right flank : GAGTTCCCTTTAGCCCGCGAGAACGACCTCGAGGGCGCCGAAAGGTTCCTCGAAGGGTTTTTGATTCTTACCCCTTTTGTCCGATTTTATGAAACTTCCACTTTCACAGATGGTGTGATTTGTGAAAGTCCGTTTTCATAAAATCGGCCCTTTGTGAAAGTAGGCTTTCACAAATCTTATAAATTATGAAAGCGGACTTTCACATATGGCGATAAAGATAGTTAGGCTCGTGAAGCACAACCCCTGGTGGAAGAGCGAAGGCTGGGAGAAAGAGGACAGGGACCTGTCGAGGACCAGGGAGATAATTCCGAGGAAGCGCGTTGAGGTGAAGGAGGGTTCCGTAACACTTCTCAGGGGAATCCGACGGGCGGGCAAGAGCTTCTACATCAAGACGCTGATAAAGGCCCTCATCGAGAACGGCACGGACCCGAGAAGGATAGCCTACATTCCCTGCGACAGGTTCACGGGGGGAGAGGTAAGGGCCTTCATAGACGAGTTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAAGAACTAAATAGTATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 154588-155980 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 154588 30 100.0 43 .............................. CAAGAGGATCCAGAAGCCAGCTGATGAGCGTCTCTGGGTTCCA 154661 30 100.0 36 .............................. GGGGCTGTTAAAAGGGCTGAAAAAGAGGCTATGGGG 154727 30 100.0 37 .............................. ATTCGCCAGAAAAGCCGAAGAAGAACTCAAAACCTTC 154794 30 100.0 37 .............................. CTCTTAAACTGACTTATTATCTCAGATTTGGCTCCAG 154861 30 100.0 39 .............................. TATTTTCAACAAATAAGACATAGAAAGCAAGAGCTTTAT 154930 30 100.0 37 .............................. GAACTGTGCTGGCTCGGAGAGCTTCTTGCGGCCGGCG 154997 30 100.0 37 .............................. TGGGCTCGATTTCATCCCATGGGGGCTACTGATAATC 155064 30 100.0 37 .............................. AGGGCTGTTCGTAGACTACTGGACGGGCCGCCTTTGC 155131 30 100.0 38 .............................. AACTTCTTACACATTTCATCAAATTCAGCAAATTTTGA 155199 30 93.3 36 ...............A..A........... GTGGAATCCTATCAATTTTCGTTCGCGGAGGCTCTA 155265 30 93.3 38 ...............A..A........... TCATAGATAAGGGATTCTCCCTCATGGTATCTTGTCAT 155333 30 93.3 38 ...............A..A........... CTCTTCCTTACCAGTCTGTCTGTCCTTGTAGACCGCCC 155401 30 93.3 37 ...............A..A........... CCAGGTGTTGGAGGAGATGGGGAGGGCTTCTTTAGGG A [155421] 155469 30 93.3 37 ...............A..A........... TCAAGTTGCTACCCAAGTCTTGTATCACTCCAAGACC 155536 30 93.3 37 ...............A..A........... GAGTTACTCTCAGTGTCCTGGACATCCACTGCAATCA 155603 30 100.0 37 .............................. TCCCACTTGGGTGGACACTTGGAGGCAAAACGGTAAA 155670 30 100.0 49 .............................. TTGGAACGAACACAGCAACGCTAATCTCAGTGCCCTTACTGACATCACT 155749 30 100.0 37 .............................. AGGCCCTGAGCCTTACGAACTGCTTGCCATTAACCTC 155816 30 90.0 36 ...........G...A..A........... ATACAGACTAATAGCCGACGTGGGCGACGGGCTGTT 155882 30 93.3 39 ...............A..A........... AACATCGTTCACTCTCACCTTCTTGTTAAACTCCTCGTC 155951 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================= ================== 21 30 97.3 38 GTTCCAATAAGACTATAAGAGAATTGAAAG # Left flank : AACAGGAGTGTACATGTCCTCGAATTTTTTCGGTTTTTGGTGTTTTGGGTTGTTTTTAGTTTTACTCTTCTCTAAGCCCTTTACTTCAAAATTAACTCCTCGAGAGTGGATTGGAGGGCTTTAGTAATCAATCGTTAGAATATTACAATCCGTAATAATTAATCCAAAAAACCATCACGAAATTTTTTCAAAATTTTTAGTAGAACCACTAGAACCCTCCAAAAACCCTAAACATTATGGAAACCTAGAGTTTTAGAGAACACTCTACCCTCACGCCCGGATTTTGAGTTTACTCTTATGATTGACCATTGGAGTTTAACACTATTCAAAACTTACTTGAGGGTAGAGGATTCACAAGGCGTTGTTTTGGATGATAGAACGGTTTAGAGTTCTCTTCTCTAGGCATTCATCCAACTCTAAAAAGCCCCCCTCACAAAAACCTTATAAAAAATCAAGGCAGGAAAATACTACAAAAACAAAAAACACCAAAAAAGCCCCCT # Right flank : GTTGAATGTGGTGGGGATCGTGAAAGTCAAATTGTTGATATACGGTGACAAGGACAAGATTAAAATTCTACGTGAAAAACTGAAGGGCATCAGTTCAATAACGTCAGTGAATATTGGTGTTGACATTACTAAACTCGTCGTTGACGTCTATGAGATGATAAACTCGCATGTTAATTTGGACGAAATTCTTGAAAGTGTTTTTGGTGAGTTGTGTGAGAACAACGTATTGTGCAACGTTTGTGATTTTAGTGGTGTTTTGGAATTTGTAAAAGTCAGTGTTGAGAAATGGAATGGGGAGAGGGTCGTTGTCGTCAGGCCCGTTGTTGATGGTGTTCTTGGTGAGTGCATCCTGTATGACCTTGCGTGTGAATTAATGTTAGAGGATTATATTATTGAGGATTATAACGGTGGTTCTGATGCAATTGTTATTTTTGAAGACGACGTGTTCCCTTCCTCTCTTAATGAGGTCGCCGAAGATATTATCAAGATGTTGAAAAGTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTATAAGAGAATTGAAAG # Alternate repeat : GTTCCAATAAGACTAAAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 177419-177808 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 177419 29 100.0 51 ............................. AAAGGGTTTGGAAAACCCTTCCAACCTTCATTGGCTCACCCCCAAAAGATG 177499 29 93.1 38 ..............T.G............ CTCTATTATGTTAATAATTTCTTCCACCTTCATACAAT 177566 29 93.1 37 ..............T.G............ AGGATTTTTGATAGCGGAATTGTGATGGTGTCACCGT 177632 29 100.0 47 ............................. TAGATTCTGGAGGGAGCTTCGGCGAAACAGTCAAGAACGCCATCAAA 177708 29 93.1 43 ..............T.G............ GGGAGGAGGCGATGGGCTGTTAGGTTTATGAACACCTTTTCTT 177780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================== ================== 6 29 96.5 43 GTTTCCGAAGAACTAAATAGTATGGAAAG # Left flank : TTTTTCATTTGTAGAGTTAGGGTTAATGCATTGAATACTCGAGGATTGAAGCACTGCTCGGGGTCAAGATTCAAAAAACAAGCAATAACGAGAAAGTAAGACAAGAATAAGACCCTGAAAACGGGTTTAGTTTTCAGATTACCCCGCCAGTAGTAATTCCCTGCCAATTGAATACATTTGAAAACTGGGGGTTCTCATAAGTCTAATTAGGGAGTGAAGGCGGGAGACCCCAAGATTGGATAGTCTAGGAGGTTTAGTTGAGCATTGTTTTTGAATTCTCTTGGTTTTAGGTAATTTTTTCATTTTTAACATGCTTCGATTTCTTGAATTCTTGTTTTAACTATTCACAATCCTCCACTCGTTAGTGTGAGGGTTTTCGTGAGTTCTTCATTTTAGGGTTGGGTTTATAAAGGGAGTGCAGTAGCACGGGTTTCCTGAAGGGGTAAATTATTTAAGCCTGGGGGAGGGAGTAATGAAGGAAAACAACCAAAAAACCCAAA # Right flank : GATAAAGTGCTCCGTGACAGAAACGACTTGACTTTTCTTTTTTCAAGCCTCGCCCTTCAGGGCGGGGAAGAAGTCAGCCCGTACATAATGCGCCATATCACGCACTATTCGCAAGCACTTGCAGCCAATTTTTGTTCAGTTTTCCTTCCTCTTCTAGAATTGCAATTTTAACTTGGAGTTCCTCCAAGGCTTCTTGGCTGGTATAATTGATAAAGTGCTCTTTGTCGAGAAGCTCTACGAGCAGAGCTGCTAGTCCTTTTGGTTTTATCATGGCAGCTAGGACAACATTGGTGTCCATGACGAGCTTCATTTCTTTGCACCTTTGAGATCCTTCCACTTTTTGTCAATTTCTTCGAGAATATCCTTGATCTCTGACCATTCGTCCTCGATCTCCCTAGTAAGGAGCTTCTGGAGAGCTTGCCTCGACCTTGCTTTAGCTTCTTTTGGTGTGATTGTTTTCGCCTTCTCTCTCGCTTTTTCCATCATTATCTGTCCAAGAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAAGAACTAAATAGTATGGAAAG # Alternate repeat : GTTTCCGAAGAACTTAGTAGTATGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 801333-800288 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 801332 30 90.0 39 ...............T..G..........T ATTCAGTATGATAATCAGGAGAATAGTACCTGACATAAG 801263 30 90.0 39 ...............T..G..........T CCGAAAAGTCAAAGCCGTACTTGTCCCTTAGGATCTCGC 801194 30 90.0 37 ...............T..G..........T GTCGGTGGAGTGTTCGACCCGTATAAGGATGTTTTTG 801127 30 90.0 37 ...............T..G..........T GGGAATTAAGGATGGGGACATTGTGGAGGTAGATCTT 801060 30 93.3 37 ...............T..G........... CTTGGGGGTTCCCCCGGCCCCCGGGTGGGGCCTCGGC 800993 30 93.3 39 ...............T..G........... TTATTTCAACATCCCCCTGATTTTTAGAGACCCATTCGA 800924 30 93.3 37 ...............T..G........... TTCTTATGTATCTCAACAGGCTTAGAAGGAGCATCAA 800857 30 93.3 37 ...............T..G........... CACACTAATCGAGAACAACCAAGCCCAACGCACCAAC 800790 30 100.0 37 .............................. TACATTTACGACATAACTCCAGAGGGATTTAAGCTTA 800723 30 100.0 38 .............................. AGGGTTGCTGGGGTTCTGTCTCCTTCTATCGGCTTGTA 800655 29 96.7 36 ..................-........... GCATGATCCTCTTTGCCCACTTCTCCTCAGCGGCTA 800590 30 100.0 39 .............................. AATACTGCATCATAACTGAGTCAATGTCCGAGACGTAAA 800521 30 100.0 37 .............................. GCGAGCTTGTCCGTGTTTATGTCCACTCCGAGTTTTT A [800501] 800453 30 100.0 37 .............................. CGCTCAGGGCCCTCTCGGCCTTCTCGACGGCCCTCAT 800386 30 90.0 37 ...............T.GG........... GTATGTTTATGTTCAATATATTCTCATTCATTTGCAC A [800379] 800318 30 73.3 0 A...T........C.T..T....AG.G... | G [800296] ========== ====== ====== ====== ============================== ======================================= ================== 16 30 93.3 38 GTTCCAATAAGACTAAAAAAGAATTGAAAG # Left flank : ATGTACATATACAAACACCAAAAAATATTCGAAACAGGATAATATTCCTAATTTTCGGAAACAAACCCTCCAACGATGCTATTCAGATGCATACTCCTAAATCAACATTTTGGAGGCTTTTAGTAATTGGTTGTTATTATATAACTTTATGTGGCTTTTAAGTCATTTTATTGTTACGAAATTTTTTCGAAATCTGAGAAAGAATGAATACATGACTGAAATATCGTGTGTTGAAGAGTAAACTTGTCCTTTTTCCTGGTTTAATAGTTTTCGAGTTTTTCCATTAGAATACAGGCTTCTGAGAGCATTGGAACCAAATCACATGAACTCAATTTCAACAGTTTTTAAGCATCTTTAGGGGCTCATTCTCCTCCCACAGCTTTTTTATTATCGCTTATCGAAGACTCCAAATCCCTCGGAAATAATCCCTCCACCAAAAATCTTATAAAAATTAAGGCAGAAGAACAGTATGAAAACAAAAAACACCAAAAAAGCCTCCT # Right flank : TGATAGCATGTTAATAGAATTCTGGTGGTCCCGCGGCCCGGATTTGAACCGGGGACCTGCGGATCTACAGTCCGCCGCCACTACCAGGCTAGGCTACCGCGGGACCCTACTGTGAGCCCCAATGTGATTTCAAAAGAGGGTGGTTTATAAACTTTTCGTGTCGGTGGCTTTAAATACAGATAATTTAAACTCAAAATCATGAAATGCCCCTTTTGCGAGCCTAGGAAAGACAGCATAGTATACGAAGGGGAGCTGGTAAGGATACTAATTGACAACTATCCCGCGAGCAGGGGACATCTTCTCGTTGTTCCAAAGAGACACGTTACCTCCCCCTGGAAGCTGAGTGATGAGGAGAAGCTTGAGTTGATGAAAGGTGTTGAGCTTGCAATGAGAATATTGAAAAAGGCCTTCAATCCGGATGGTTTTAATGTTGGAATAAACATAGGAGAAGCCGCAGGCCAAACCGTTAAACATCTTCACGTCCACGTAATCCCTCGCTA # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAAAAGAATTGAAAG # Alternate repeat : GTTCCAATAAGACTAAAAAAGAATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 988185-987179 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 988184 29 100.0 38 ............................. TTACGCCCAGGCTCACTTTACTATTCTATGTGGTTACA 988117 29 100.0 54 ............................. GGTTGCCGAGTGATTATGAGTTTACCGCCTCCTGGTGCTTTCCATACTATTTAG 988034 29 100.0 36 ............................. CTGACCTTGTTAGGTATTCTGGGGTTGAAGTGAAGA 987969 29 100.0 43 ............................. ATTTGCTTTTGAATGTAATCATTAAACTCTTCATATAACTCAT 987897 29 100.0 36 ............................. ACCGCCGATCAAGCGCTTCCCGACCTCCCTGGCCTT 987832 29 100.0 44 ............................. AAACAGACAAACAGACAAGGCAATCTCTTTCATACCTAGAACTT 987759 29 100.0 36 ............................. TGCTGTCTGGGGCCCCTACCGGCCCCAGCTCATCAA 987694 29 100.0 37 ............................. AAGTTGTTGGGTGGCTCAACGTCCGGTGTCATCACTT 987628 29 100.0 38 ............................. GGAAAAATCACCTGCACAACAACACCCCCAAAGAAAGG 987561 29 100.0 45 ............................. ACGAACCTTAGGACAATCTCGGTGTCCCTCTTACAGTATTCTGAA 987487 29 100.0 36 ............................. CACAACCACCACCTTTGCTTGTAAGGGGTAGTTTTG 987422 29 93.1 37 ..............T.G............ CCCTCAACAAACGCCCTACTAAGCTCCCTCCAACCAA 987356 29 93.1 47 ..............T.G............ AGCTCAACTTCCTCATCCGTCTCATATTTTAGTATTGTTAGCCCTCC 987280 29 100.0 43 ............................. CTGGTGTTGTTGTAGGTGAAGAAATGCACGGCCTCAGTTGTGC 987208 29 89.7 0 ..............T.G......T..... | G [987182] ========== ====== ====== ====== ============================= ====================================================== ================== 15 29 98.4 41 GTTTCCGAAGAACTAAATAGTATGGAAAG # Left flank : TTTTTCATTTGTAGAGTTGGGGTTAATGCATTTAATACTCGAGGATTAAAGCACTGCTCGGGGTCAAGATTCAAAAAACAAGCAATGATAGGAGAGTAAGACAAGAATAAGACCCTGAAAACGGGTTTAGTTTTCAGATTACCCCGCCAGTAGTAATTCCCCGCCAATTGAACACATTTGAAAACTGGGGGTTCTCATAAGTCTAATTAGGGAGTGAAGGCGAGAAGCCCCAAAATTGGATAGTCTAGGAGGTCTAGTTAAGCATTGTTTTTGAATTCTCTTGGTTTTAGGTAATTTTTTCATTTTTAACATGCTTCGATTTCTTGAATTCTCGTTTTAACTATTCACAATCCTCCACTCGTTAGTGTGAGGGTTTTCGTGAGTTCTTCATTTTAGGGTTGGGTTTATAAAGAGAGTGCAGTAGCACGGGTTTCCTGAAGGGGTAAATTATTTAAGCCTGGGGGAGGGAGTAATGAAGGAAAACAACCAAAAAACCCAAA # Right flank : AGCAAAGAACTAACAAAGGGAAGGAAAAATTCTTATATTTACCTTTCAGCCCCAATCTTGTATGGAGAAGTATGCCGTAATCCTCGGTAAGAATCCAGAGCTAAGCCTGCTTGAGCTTAGATCGTTTTCAAGAAGGTTTAGATTAGGAGTTAGAATTCTTGAGGAGCACCTATCTGGCCCAAACAAGTCCTTTGTCTTAATTCAGGCAAAAACAGATATCGAGAGATACTTTAGATTTATAGGTGGCTCCTTAAAGCTGGTAAGGATAGTTGGAGAGGGGATAGATGCAATAGAAAATCTTGAATATGCAAGGCTTTTCACAGTAAGCCTCTACGGGAGAGAAGACTGGAGGCTATGGCGGAAGTTGGGGTCTGCGGTGAAGAAGGTTTTCAAGGAGAAAGATTCGAGTAAGTTCTTTAAGCCAGCCAAAGTATATGCAATGCCAAGCGAGCTAGTGTTAAAGGGGTTCCCAGAAACCAAGGATGTAGTTTTTCTGTTTA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAAGAACTAAATAGTATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 1081855-1082496 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1081855 30 100.0 39 .............................. GGAGTCAATGTTGCACTCAATACGTGACATTAGACACGG 1081924 30 100.0 37 .............................. GGTATCCAAATAGCTTGAAAAACCGACAAGCCATCCT 1081991 30 100.0 37 .............................. TACATCGACACGAGCGAATACTACCACATCGAGGCAA 1082058 30 100.0 37 .............................. CCGTGTCCTCTGTAGTAGTATAATAAACCTGGGCGTC 1082125 30 100.0 41 .............................. ATGAGCCCTCCTTTTGACGGCTTGGTACTTTGGTACGCCCC A [1082145] 1082197 30 100.0 37 .............................. TCTTCAATCATGTTCTCAATGGAATAGACGTCTATAA 1082264 30 100.0 37 .............................. GAGGAGGTAGCAAATGCGATTTGGAATGTGAAACTGA 1082331 30 100.0 39 .............................. CGTGGTTCTGGAGTATCTTACCCTCGAGCTGCGGGTTTG 1082400 30 100.0 37 .............................. GCCGATTCAGTTCGAGACTGTGAGGCAGTCAGGAACT 1082467 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 10 30 100.0 38 GTTCCAATAAGACTAAAAAAGAATTGAAAG # Left flank : GCAATTAAATTCCCAAGTGAACTCTAAATTTTTTCGGTTTTTGGTGTTTTGGGTTGTTTTTGGTTTTACTCTTCTCTAAGCCCTTCACTTCAAAATTAACTCCTCGAGAGTGGATTGGAGGGCTTTAGTAATCAATCGTTAGAATATTACAATCCGTAATAATTAATCCCAAAAACCATCACGAAATTTTTTCAAAATTTTTAGAGGAACCACTAGAACCCTCCAAAAACCCTAAACATTATGGAAACCTAGAGTTTTGGAAAGTACTATACTCCCGTGCCTTGATTTTGAGTTTACTCTTATGATTGACCATTGGAGTTTAACACTGTTCAAAACTTACTTGAGGGTAGAGGATTCACAAGGCGTTGTTTTGGATGATAGAACTGTTTAGAGTTCTCTTCTCTAGGCATTCATCCAACCCTAAAAAGCCCCCTCCAGCAAAAACCTTATAAAAAATCAAGAGAATAATGTAAAAACAAAAAACACCAAAAAAGCCCCCT # Right flank : GGAATAAAAGGGCTACAAAAGGGGGAAGGTTTCAACAAGGCTAAAGGAATTGATTGAGTTAAAAAGCATCTTGATAGTAAACTTTATAAATCCAGACCAAAGAAGAAAATGACGGACGGTGGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCTTGGCAAGGCGGAGGCCCCGGGTTCAAATCCCGGCCGGTCCACCACAAATTTGGGCGGGCCCGTGGTCTAGACTGGTTATGACGCCACCCTGACAAGGTGGAGGTCCGGGGTTCAAATCCCCGCGGGCCCACCATTCAACTTAAAAATATTCCCCAAATTCTGAAATATAAGGCGAACCTTAAATAACATGAAAGAATACAAAATTGGGAATTATCAGCTTTTGGATAGTGTATGCTATCTTATTTTGTCAGAGGAAGTGTTATGAATGAGCCCAGCTACCCTCCATACTGAGTTACAAAATGAGCTTGTCCAATTGGGAAACAAATTCGGGTTTTTAGCTACAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 1467031-1466492 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 1467030 29 100.0 36 ............................. TAAGAGGGTGCAAAAAAATAAAGACGTCAGGAGCCG 1466965 29 100.0 42 ............................. CCGAAAACTTATATGTAAAAGAGTATCTCCATGACGACACAA 1466894 29 100.0 45 ............................. ATCACCGTCAAAGAAACGTAACGCCTCCCAATGGGGTGTTTTCGT 1466820 29 100.0 44 ............................. CACAAAACCTGCTTACCATTCCTCAACGCTCTATAATACTTCTT 1466747 29 100.0 45 ............................. TCCTCGGTAACTATCTCTATTCTGAGTATTCTCTGCAAGGCCACT 1466673 29 93.1 48 ..............T.G............ AAATTTAGCGTTTATGAGCCCTTTCATTGGCCCTACTGTTTCCGAAGA 1466596 29 79.3 47 AC.AAAT...................... AGTTTTATTATGTCTGCTTCTAGCTCTTTTTCTACCCTTCTTGCTAG 1466520 29 79.3 0 .......................TCGCTT | ========== ====== ====== ====== ============================= ================================================ ================== 8 29 94.0 44 GTTTCCGAAGAACTAAATAGTATGGAAAG # Left flank : TTTTTCATTTGTAGAGTTAGGGTTAATGCATTGAGTGCTCGAGGATTGAAGCACTGCTCGGGGTCAAGATTCAAAAAATAAGCAATGATAATAGAGTAAAACAAGAATAAGACCATAAAAACTGATTTAGTTTTCAGATTACCCCACCAGTGGTAATTTCCCGCCAATTGAATACATTTGAAAACTGGGAACCCTCATAAGTCTAATTAGGGAGTGAAAGCGGGAGACCCCAAAATTGGATAGTCTAGGAGGTTTAATTGGGCATTGTTTTTGAATTCTCTTGGTTTTAGGTAATTTTTTCATTTTCAACATGCTTCGATTTCTTGAATTCTCGTTTTAACTATTCACAATCCTCCACTCGTTAGTGAGAGAGTTTTCGTGGGTTCTTCATTTTAGGGTTGGGTTTATAAAGGGAGTGCAGTAACACGGGTTTCCTGAAGGGGTAAATTATTTAAGCTTGGAGGGGGGAGTAATGAAGGAAAACAACCAAAAAACCCAAA # Right flank : TAATTTTTAGATAGTTTTGAAAGAATTAAATAGCTGTGAGAATGGTACGGAAAACAAAGTATATTTCGGAATTTCGATGATACAATTTACCTAATTCTGTAATTATAGCAAAGTTTAAAAACCAATACTTTATATACTTTGGTTCTGAATTTATACTAAGGTGGTTCGAAAAATGATAGATGAAAGGGATAAGATTATACTCGACATGCTCGTGAAAGACGCGAGAACCCCCTTCACGGAAATCGCGAAGAGGCTAGGAATCAGCGAGACAGCAGTGAGAAAAAGGGTAAGGGCGCTTGAAGAGAAGGGAATAATTGAGGGCTATACAATAAAGCTAAATCCCAAAAAGCTTGGCTATTCGCTGGTGACTATTACGGGAGTGGATACGAGGCCGGAGAAGCTCTTTGAAGTAGCTGAAAAGTTAAAGGAGTTTGAGTTTGTTAGGGAGCTTTATCTTTCTAGTGGAGATCACATGATAATGGCCGTTATCTGGGCAAAGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAAGAACTAAATAGTATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 8 1689950-1690662 **** Predicted by CRISPRDetect 2.4 *** >NC_017946.1 Pyrococcus sp. ST04, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1689950 30 100.0 36 .............................. TTTGGCTGAAACTCTTCTGAGAGAGCCGCTATTTTT A [1689964] 1690017 30 100.0 43 .............................. ATGTAGAACTTAGGGCACCAGCTACAGGGTTTTTTGAAGTAGA A [1690031] 1690091 30 100.0 36 .............................. TGGCTAAATGGTGGTCCGCTTGTGATGATCATTAGT 1690157 30 100.0 37 .............................. GTATATGGGAGTGTTATTTCTTGCCCACTTTCTATTT 1690224 30 100.0 37 .............................. CCGATGACGCCTGCCTTCTCAGCCTCGTCCTGCTTGA 1690291 30 100.0 37 .............................. GAACTTTATCTTGTCAATCAGCCAGCCTATTGCTCCT 1690358 30 100.0 36 .............................. CTGCATTCAGCGAAGCAATATCTCCTGACTTCCAGT 1690424 30 100.0 37 .............................. GGGACTTTAAGCGGAAGGTTGATCCCAGGCTCTACAT 1690491 30 100.0 36 .............................. ACGGGGGCAATTCTGGTAATAGCAATAGTAATATGA A [1690511] 1690558 30 96.7 44 .G............................ CCTTTTCCAATGTGAAGTCTCTTGATGAAGTAGTAAAATCTCTA 1690632 30 73.3 0 ....TG...........C.TTG.GA..... | T [1690659] ========== ====== ====== ====== ============================== ============================================ ================== 11 30 97.3 38 GTTCCAATAAGACTAAAAAAGAATTGAAAG # Left flank : AATCTTTAGGCCACTCTCGAATTTTTTTCGATTTTTGGTGTTTTGGGCTGTTTTTGGTTTTACTCTTCTCTAAGCCCTTCATTTCAGAAGTAATTTCTCAAGAGGGGGATTGGAGGCTTTTAGTAATTGGTTGTTATTATATGACTTTGTGTGATATTTGGGTTGGTTTGTTGTTGCGAAAGTTTTTCGAAATCTGAGAAAGAATGAATACATGATTGAAATATCGTGTGTTGGAGAGTAAAATTGTCCTTTTTCCTGGTTTAATAGTTTTCGAGTTTTTCCATTAGAATACAGGCTTCTGAGAGCATTGGAACCAAATCACATGAACTCAATTTCAACAGTTTTTAAGCATCTTTAGGGGCTCATTCTCCTCCCACAGCTTTTTTATTATCGCTTATCGAAGACTCCAAACCCCTCAAAAACAACCCCCTTGCCAAAAACCTTATAAAAAACAAGACAAAAGAACAACGTAAAAACAAAAAACACCAAAAAAGCCCCCA # Right flank : GACTATAAATTAAGACTGTAAGAGGATTGACGTGCTTGTCCATATAGGGATTGATGATACTGACTCACCAAACGGCATGTGCACAACTTATCTAGGCGCAGTCCTCTTTAAAGAACTTTCTAGGTTAGGAGACCCTTTAGATCTCCCAAAATTAATTCGTCTTAATCCGAATATTCCTTATAAGACGAGAGGAAATGGAGCAGTGGCCTTAACTTTTAACATTGAAGAGGAAGATTTCAAGGAGGTCAAAGAGGTCGTCATTGAGAGGGTTAAGGAATTAGCTGACTTCTCCCACGAGAACACAAATCCCGGTATTGCGTTCCTCATTGGAGATGTACCAGAAAAGCTCAGAGAATTTTCCATCAAGGCCTTAAGGGAGCATGTTAGCATAGAAGAAGCGGAGAGAGTTGCAAAAGATGTGAAGGCTGAGGTTATAAAGTTCAAACTTGGAAGAGGAATAATTGGGGCCCTAGCTGCAATTGGATACCCGCTTAGAAAGT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //