Array 1 35342-33990 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYC01000015.1 Dorea longicatena strain bj_0095 Scaffold_0015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 35341 32 100.0 33 ................................ TAAATTCCCACTGCCCTGTAGTCCAGAAGTCTT 35276 32 100.0 36 ................................ GGGTGTTAACTTGCTTGATATTACAGAATATATCAA 35208 32 100.0 34 ................................ GTACAAGATATAAAATGACGGTCAATGACGCTTG 35142 32 100.0 34 ................................ ACCTGCTTCATTCAGTTTTGAATATAACTGAACA 35076 32 100.0 33 ................................ ACTAAGTACGACAATTATATTACGGACTGTCTT 35011 32 100.0 35 ................................ GATATATCAGTAGGTTTTACATTAATAATGGAATC 34944 32 100.0 33 ................................ TTCCGTACCCATTCCTAATGCGGACATTGCATC 34879 32 100.0 35 ................................ TTCTCCAGAGTCATGGCCACATCCCCGTTCTCCAC 34812 32 100.0 33 ................................ GATAAGAGATTATCGGCAGAAGCCGTGGCGAAG 34747 32 100.0 36 ................................ ATGAATATGTGCAGATCTTCACCCAGCTACCGTAAT 34679 32 96.9 35 ..........A..................... TTGTGACTGTAAGATTTTGGGATATGGTCGAAAAT 34612 32 100.0 33 ................................ GCAATAGTTCCATCATCAACCGCTTTTGTCAGC 34547 32 100.0 33 ................................ ATTACTGCAATTATTTTCATGATACTTTTGCCT 34482 32 96.9 34 ..........A..................... ATGATGCCCCTGCATCCGGTGGAAACCATTGCTG 34416 32 96.9 33 ..........A..................... AACAAGGAAAATCCGCAAAGGAAATCGTACCAT 34351 32 96.9 33 ..........A..................... TCTGATAAAAACTTGATCATATGTGTCCTTTCC 34286 32 96.9 35 ..........A..................... GACATCTCTATAACCTCACTTCCTAATGTTCTTCT 34219 32 96.9 34 ..........A..................... ATGTATCTTGTTGTCAGGTTCTTCCAACCAATCC 34153 32 96.9 34 ..........A..................... GCTATTCGCATCAACTACATGAATGCAAATAATG 34087 32 100.0 34 ................................ ATGTATCTTGTTGTCAGGTTCTTCCAACCAATCC 34021 32 96.9 0 ..........A..................... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 98.8 34 GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Left flank : AGACGAATATCCACCGTTCTTCTGGAAGTAGGTGATGGAATGCTGGTTTTGATTACATATGATGTAAATACCCAGACATCTGCTGGGAAAAGGCGATTAAGAAAAGTAGCAAAAGAATGTACAAACTATGGAACTCGTGTGCAAAATTCTGTATTTGAATGTCAAATGGATGCAACAAAATGCAGGCAGGTAAAACATATCTTAGAGGATATTATAGATAAAGACGTTGATAGTTTGCGGTTTTATTATCTAGGTGATAAGTATAAAAATAAGGTAGAACATATTGGCGCAAAACCTGGATTTGATGTTACGGATACTTTGATATTTTAGTGCGAATAATAAGCGCACAGAAATCTTCTGGGAGATTCGCACCGGAAAATGGTGTGCTTTTCCAGAAGAAAAGTAAATAGGAATTAGAAAAAATATAAATTTTTAACGTATTATATTCAAAGGGTATAATACGTGCAGTTTTAGACAGAGTGTTTTTGTTTAAAATTGCT # Right flank : GAGAATGATGTAAAAATGTATGGTACTCAAGTATAGCCCTTTTTATGAGAAAAATAGTTCCAAGTAACGATATGAATTCAATTTATGTTATGCGAAAAAGGGGAGAATTGAAAGAATATAAGTTACAGTTTCTTAGCATTAAAAAAGGACTGCATTATTAGGGAGGAGTGCAGCCCTGAGGAAAAAGTTATGAAAAAGATTTAAAGTGTTTGTTCTTTTGAACAATTCCTAGTATAGAAGCGAATTGTGATAAAATTGTGATGGAATTAGAAAGAAATTGTTAACAAATTAAAAACATAAAATAGAATACGATTGGATGCATCATAAACGGTGCCAATGTTGAAATCCAAAAGTCCGGGTGTTAGAATTACAACAGATACTATACATAGAAGATATATATAAATATCAAAGAACACAAGAAACCACACAGAACATACGAACAAACACCAAGGAGGAATACACCATGCGGATCCTAATCTACGGCGCCGGAGTCATCGGAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Alternate repeat : GTCATCCTCCATGTGAGGATGTGAGTTGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 14513-14080 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCYC01000006.1 Dorea longicatena strain bj_0095 Scaffold_0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 14512 37 97.3 29 G.................................... GACAGCTTTGTAAAGCCATATACGTCTCT 14446 37 97.3 29 G.................................... CTATCATCGGGGCAATGAAAGCTATCCTC 14380 37 100.0 29 ..................................... TATAGGTGTCGAACTCTTTCCACCAGTAC 14314 37 100.0 29 ..................................... GATTTCTGTCAGAAGCTTATATCAAGTCT 14248 37 100.0 29 ..................................... CCTCGTCTGTCTTGCCACACAATCCATCG 14182 37 100.0 29 ..................................... CCACACCCTCGGTCACATGAAAGAGATAT 14116 37 94.6 0 T...............................C.... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.5 29 AGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Left flank : AAAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATCGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGTTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAGTCTGACTGAAAAGTTTATAAACTATCTGAGAACCATAAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATCTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTTATTAATTTGGAAGGAGTAAAATCAGACCCCATCGAAAGTGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTATTAACAATCTTCTATCGTAAGAAGATAACGACTCGGCGAGAACCGGATTTGA # Right flank : CACCAAAGAGTTCAGTAAAATCAAGCGTTCTCAGTTCTGCAAACGATAATTTAACAGAATATCGAAAAAGAGCAACAAACCCCGAAAATCCAGTATTTCCGGGGCTTTTCTTTGCGTATCATTTGATTTTATTCCTGCAATAATTGCTTTTCAAAGGTGGATAATAATTTGTTGATCGTAAAGAAATAACTCTTGCATTCGCTGCATGTTTTTGCATCGACTTCGATATCACCAAGAATAATGAGTTTGGCAGCCTGGAGTGCTGCAATAATGGTACGAAATTCGTCGGGTGTAATATCTGTGGCGTGATTAATCAATTTTTTCGCCGCAGAACAACAGAGTTGATAATTAATTTCTGCCTGGGCTTCTGATTCTGCAAGTCCAAGACGAGGCAGAACGGTAAGAGCGTAAGCGGTTGCTTCTATGTCAGAATGATTGAAGGCATAGGAAATATGGCTCATAGTAAAACCTCCTTAAGTTTTTAAGAAAATTATAACATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Alternate repeat : GGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //