Array 1 95976-94972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXZW01000018.1 Escherichia coli strain 102298_aEPEC, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95975 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 95914 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 95853 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 95792 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95731 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95670 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95609 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95548 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95487 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95426 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95365 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95304 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95244 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95183 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95122 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95061 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95000 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77227-78414 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXZW01000019.1 Escherichia coli strain 102298_aEPEC, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77227 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 77288 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 77349 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 77410 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 77471 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 77532 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 77593 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 77654 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 77715 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 77776 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 77837 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 77898 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 77959 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 78020 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 78081 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 78142 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 78203 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 78264 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 78325 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 78386 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //