Array 1 284518-286170 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGJ01000002.1 Moraxella catarrhalis strain COPD_M130 NODE_2_length_338823_cov_16.3271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284518 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 284578 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 284638 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 284698 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 284758 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 284818 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 284878 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 284938 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 284999 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 285059 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 285119 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 285179 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 285240 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 285300 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 285361 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 285421 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 285481 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 285541 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 285601 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 285661 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 285721 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 285781 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 285841 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 285901 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 285962 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 286022 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 286083 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 286143 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //