Array 1 25937-27551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUUY010000014.1 Escherichia coli strain 12-1012-1P contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25937 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 25998 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 26059 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 26120 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 26181 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 26242 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 26303 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 26364 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 26425 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 26486 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 26547 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 26608 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 26669 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 26730 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 26791 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26852 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26913 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 26974 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27035 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 27096 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 27157 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 27218 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 27279 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 27340 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 27401 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 27462 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 27523 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48322-48656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUUY010000025.1 Escherichia coli strain 12-1012-1P contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48322 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 48383 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 48444 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 48505 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 48566 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 48627 28 93.1 0 ..........................T.- | TG [48652] Deletion [48655] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : TTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //