Array 1 37541-38228 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABA01000038.1 Pseudomonas aeruginosa strain HUM-253 PA3_G3_NODE_39_length_48219_cov_48.7364_ID_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37541 28 96.4 32 ..A......................... AAAACGAAGCTTCCTGCTAGAGGACTGCTGTA 37601 28 100.0 32 ............................ TGAGCTGCTTGATGCTCTTGAGGACGCGGTGA 37661 28 100.0 32 ............................ TTCGACGCGGAGCTTGTTCCCATCGACCCGAA 37721 28 100.0 32 ............................ TTGTAGGAGCCGGGCAACAGCCCCTGGTGCGG 37781 28 100.0 32 ............................ TTGGTCGAATCCGCGCAGGCCTCGCTTGACCG 37841 28 100.0 32 ............................ TTGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 37901 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGGGCGGTC 37961 28 100.0 32 ............................ AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 38021 28 100.0 32 ............................ ATCGGCTGGTCGCTGATCCCGCTGGGTTGGAA 38081 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 38141 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38201 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47925-46756 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABA01000038.1 Pseudomonas aeruginosa strain HUM-253 PA3_G3_NODE_39_length_48219_cov_48.7364_ID_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47924 28 100.0 32 ............................ TCCAGGTGCCGTTCGAGCACCCAAAGCCAGCG 47864 28 100.0 32 ............................ AAGGCCCCGGCGTATGCGATTGCTTGCTCATT 47804 28 100.0 32 ............................ TCTTACCAAGGCCTTTGTAGCGGTATCCGACA 47744 28 100.0 32 ............................ GACGACTGCGGCGGCGATCAGGGAGGCTACGA 47684 28 100.0 32 ............................ AGAACAATGGGAGCCGTGACGACCAGCATGGT 47624 28 100.0 32 ............................ GTTCGGTTAGATCTGGCGATCATCAGCCACCT 47564 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 47504 28 100.0 32 ............................ TCGCAGCGGCACTGAGCGATGCGGATCTCGCC 47444 28 100.0 33 ............................ GCAGAGCGGAGCCTTGCCCCAGCCTTTCTTGCC 47383 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47323 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47263 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47203 28 100.0 32 ............................ TGCACAAAAACACTGCGCGACCAGACGACATG 47143 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47083 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47023 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 46963 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46903 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46843 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46783 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGTCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 295-982 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABA01000029.1 Pseudomonas aeruginosa strain HUM-253 PA3_G3_NODE_9_length_212224_cov_56.541_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 295 28 100.0 32 ............................ GCAGCGATCAACGGCCATATCTACGAGCTGGA 355 28 100.0 32 ............................ CTGACCCGCCGCATGGTGCTGGGCCTGCAGGA 415 28 100.0 32 ............................ TGCCAGCGGGCGGTATGCGCCTGCGGAGCTTC 475 28 100.0 32 ............................ TCGATCAGCTTCGCGGCGCGGGCGGTGTATTC 535 28 100.0 32 ............................ ATGTACGAAGTGCAACGCAATACCTACGTCCC 595 28 100.0 32 ............................ TTAGCGGTCCGTCCTCGGTGACGGGGCCTAAG 655 28 100.0 32 ............................ AGGAACGGCGTGCCCTTTTCGTTGGAGATCGT 715 28 100.0 32 ............................ TAGCGATCGTCAGGCAGTACCTGGTGCAGTTC 775 28 100.0 32 ............................ TGGTAGCGCTTCGGCTTGTCCGGCCCATCGGG 835 28 100.0 32 ............................ ACGAGGCATGGTTGAATCGCCCACAGGGCGGC 895 28 100.0 32 ............................ TTCAGCTTCTGCTTCAGCCGCGGATCGCTGAT 955 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCTAGCCGAGAGGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACGGCGTCCCCCATCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //