Array 1 21563-22588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPR01000019.1 Neisseria meningitidis strain NmHEN3260 Scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21563 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 21629 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 21695 36 100.0 30 .................................... TTTTCATCGTAACATAGTTGCTTGCGCCAA 21761 36 100.0 30 .................................... AAATTTAAAAACTTCAAAATTAAATACAAG 21827 36 100.0 30 .................................... AAGGGGGGTCAGGGGGGTCGGAAAAAATAC 21893 36 100.0 30 .................................... ATCAAAAACGCTCAATATAAAAAATCAAAA 21959 36 100.0 30 .................................... AATTTACCAAAACAAACCAATACCATGCAC 22025 36 100.0 30 .................................... GTGTGTTCGGCAACTCTGACCGCATGACGA 22091 36 100.0 30 .................................... GACGTCAAATCGCGTTACGCCATGGCGCAG 22157 36 100.0 30 .................................... AATCGCCTCGAGCCATACGGAATCAAGCTC 22223 36 100.0 30 .................................... ATACGAACTCATCCGGAGCCACGCCGAGCC 22289 36 100.0 30 .................................... AAAAATAACAGACTCATCAGAAAAATAAAT 22355 36 100.0 30 .................................... CCAGCCTACAAACCCTACAATCGCAATCAA 22421 36 100.0 30 .................................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 22487 36 100.0 30 .................................... ATGTTTTTGGCGAGATGGTCGTATGTATCG 22553 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 6904-7473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPR01000025.1 Neisseria meningitidis strain NmHEN3260 Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6904 29 96.6 31 ............................T CCTATTGACATTGCACCACCTGTCAATTGAA 6964 29 100.0 31 ............................. ACAAATCACTCATGTGATATGTAACCCTTAA 7024 29 96.6 31 ............................T CCTATTGACATTGCACCACCTGTCAATTGAA 7084 29 100.0 31 ............................. ACAAATCACTCATGTGATATGTAACCCTTAA 7144 29 100.0 31 ............................. TCACTAGAGGTGAATGAGCCACTTGGTTATG 7204 29 100.0 31 ............................. ACAAATCACTCATGTGATATGTAACCCTTAA 7264 29 100.0 31 ............................. TCACTAGAGGTGAATGAGCCACTTGGTTATG 7324 29 100.0 32 ............................. ATTCTGATTTCACTAAAATTCGTCTGACTGAA 7385 29 89.7 31 ...........T...........G....T CCATTTTGACCTCGTGTAAGCCCAAGTGTTG 7445 29 89.7 0 .C.....................TC.... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 31 GTGAGTTATCGCATAGGCGATTTATAGAA # Left flank : TTCCCGGACATAGTTCAACATTTCTTGAAATTTCGGTCGGTCGGTATTTTTACCTGAAGCACGATCAACAAAAATCCGGTCGACTTCAGTTCCCTCAAGTTGACGTCCCGTATTTTGCTCGACCGAACTCACCCGGACATAGCCTACTTTTTGACCTTTCATTCTTTTATGCCCCAATTGGATAAAAATGAACAATTTCGTAAATTATAAATCTTTAATATCAAAGTTACATGTTACATATGGTTAAAAATCATTTAAATGTTACATGGTTTTAAGAACTTTTATAATGTTATCTTAGGGTATACTCCAAGTTTACATAACATCTCTTATAGGAATTTCTTTGTAAGTTTCGCGTAAAGTTCTATAAAATCACCTAATTTTTTAATTCACGATTCAAGTTATTGAATATATTTAAATTTTTTTCATTAAATTTTTTTTGATTTTTTGCATAAAAAACTGTAAATTATTAATTAATCACATTATATATTCTTAATATTGTT # Right flank : AAGTCCATTTTAAAAATGGGCTTTTTTGATGGTGAGTTATCGCATGATTTTGAAATTAGTTATTTAAGATTCTCTATAAACATGTCACCTTTCGCTCCAACTCATCAACTGATTTAAATTCCTCACCATAGAAACCCTCTGATTTTAGTATTCCAAAGAAGCTCTCCATTGCAGCATTATCTAGGCAGTTGCCTTTAGCCGAATCAACGATTAGGAATATCAACTACACATTCAAAAATCTATTGCTCTTTTAGTATTCATTTATGTTTCTTGTAAGAGTCTTTAAAAGTACATTTAATCATGCTTTTAAGTATGCTATTGTTCCTGCATCACTTGTAGCAATTCACCTAGACGCCAAACACTACTCTATAGAGGCTTAACCATGACTCAACTAATCCATGCGCGAATGACTGCAAGTATTACTGAACTCAAAAAGAGTCCGATGGATACAGTTTTGGCAGGCAAAGGTGAGCCTGTCGCAATCCTCAATCGTAATACAC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGTTATCGCATAGGCGATTTATAGAA # Alternate repeat : GTGAGTTATCGCATAGGCGATTTATAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 3751-3581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPR01000058.1 Neisseria meningitidis strain NmHEN3260 Scaffold58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 3750 30 100.0 38 .............................. CCTTAGAACAACAGTAATATTCAAAGATTATAAAAGAC 3682 30 96.7 42 ..........................T... ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 3610 30 96.7 0 ..............T............... | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 97.8 40 CCGTCATTCCCGCGCAGGCGGGAATCCAGA # Left flank : TTTTGTAGGAATGATGAAATTTTGAGTTTTAGGAATTTATCGGAAAAAACAGAAACCGCTCC # Right flank : CCGTTGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAAGTAAGCTTTCCAACCAGCAATTCGGCGGGCGCGGGNNNNNNNNNNCCCCCCCCGCCGTTTGCGGCGCGCCTGCCGCCGACGGTATCCCGCGAAGCAAGATTTAAGGGATAAAATATGTTCCAACACGCAGGGCGGCACATAAGGCGCCGCCCTGATTCGGAAGGGGCTGCATCCCTCCCGGACAAAGCCTGATCCTGCCGCCCCGAAGGACGGATGCCCGAAGGGCGGGGGGTTTGACCGAAAAGGAAATACGATGAATAAAACTTTAAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGGGGGGGGGGGCGATGGCGCAAACCCATAAATACGCTATTATCATGAACGAGCGAAACCAGCTCGAGGTAAAGGGGAATGGGCAATATTCAACAATAA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATCCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //