Array 1 81529-82350 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBG01000001.1 Streptococcus mutans strain UAB-40 NODE_1_length_1173647_cov_182.533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 81529 28 100.0 33 ............................ TATTTTGCATATTTTTGTTCCATCTTCTGAACA 81590 28 100.0 33 ............................ TGACAGAATTAGTATGTATTCGGCCGGTCAAGA 81651 28 100.0 33 ............................ TAGACGAGTAAGGAATATTGAACTTCCAACAGA 81712 28 100.0 34 ............................ TATTACTCTATATTAGTAAATTGCAAATCTTATG 81774 28 100.0 33 ............................ CTAATATTTTTTTAAGTTTCATCGGTTATCCAC 81835 28 100.0 33 ............................ CGGCTTGACTTCAGTACAGCAAGAGCTTGCAAA 81896 28 100.0 33 ............................ TGCTATCCACTTATAATCAGCGGGATTTTGCGA 81957 28 100.0 33 ............................ ATTTACAGCTGACTCAATCAAGTCATTGATTTG 82018 28 100.0 33 ............................ TAACTGAACGATGAGAAATACAATGAAATAGAC 82079 28 100.0 33 ............................ TTGAACAGGATGACGATAGAGTACCATGTTCTA 82140 28 100.0 33 ............................ TGGAAGGTCGTTAAAGTTAAAGCTGATTTGTGG 82201 28 100.0 33 ............................ TAAAATCTAGTTCAATTGCTAAACCGTTTATAG 82262 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 82323 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183919-184944 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBG01000001.1 Streptococcus mutans strain UAB-40 NODE_1_length_1173647_cov_182.533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 183919 36 100.0 30 .................................... CGTTGCCAATAGCAGATAATCCAGCAGTAC 183985 36 100.0 30 .................................... TAGATGCATTACAAAAGTTTATTAACAACA 184051 36 100.0 30 .................................... AAGATAATGCAGTAGTAGCCTTGAAAGATG 184117 36 100.0 30 .................................... AGAATTTTTCCATTCTTGCTCCTGATTGGT 184183 36 100.0 29 .................................... TTGTTTGCTGTCGCCAAGGTTGAACGCCT 184248 36 100.0 30 .................................... CTAAAAGTTTTGATAGAGAACTAAAAGAGT 184314 36 100.0 30 .................................... GTGTTTTACTTGCGCTTCCTGTCATTGACA 184380 36 100.0 30 .................................... GATAAAGCGAATGGCAATCTGAGATTTAAT 184446 36 100.0 30 .................................... CAAGCTTAATGACGATGCCACACCAGGCAC 184512 36 100.0 30 .................................... CGGATATGAATTACATATTATCTATAATGC 184578 36 100.0 30 .................................... CGTACTATTATCGAACCAGCATCCAGTTGA 184644 36 100.0 30 .................................... TCGACCAATCTTTTTCTCAACTTGCGCAGT 184710 36 100.0 30 .................................... TTCATCTTGAGTTACTTTGCTATTACGCAT 184776 36 100.0 31 .................................... TTATTTGCGTCCTGAAGTACCAGCCACGTTT 184843 36 97.2 30 ...................................T CGGCATATATAATCCGTAAAGGCGGCACAT 184909 35 75.0 0 ..........CA.......A.TG..-T.A.T..... | A [184925] ========== ====== ====== ====== ==================================== =============================== ================== 16 36 98.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CACATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //