Array 1 59540-58105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGT010000016.1 Streptomyces sp. DH12 NODE_16_length_162326_cov_30.290970/1-162326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 59539 29 100.0 33 ............................. GCGGCGATCTTCACGTACGTGGTCACCGCGACG 59477 29 100.0 32 ............................. GGGGAAGTGGACCGAGCACGAGGTGGCGCAGC 59416 29 100.0 32 ............................. GCCTGCATCTCCGACTCGCCGTACTCGTCGTC 59355 29 100.0 32 ............................. GGCGGCCGGCGCCTGGCGAAGACGATGCGGTT 59294 29 100.0 32 ............................. TCGACAACGGAGAGAACCTGCTGGACCTCGCC 59233 29 100.0 32 ............................. CCCGCCGCCTCTACCGCGTCGCCGGCCTCGAC 59172 29 100.0 32 ............................. CCTGTACGCGTGGCTGGCGTCAGCGGCGGAAG 59111 29 100.0 32 ............................. CCCAGCCCGGCGCGCGGCCTCCGCGGCGGCCA 59050 29 100.0 32 ............................. GTCCTCACTGCGCAGGGTCCCCTGCCCCTGGC 58989 29 100.0 32 ............................. AGCGGCTGATTACGCAGCATTTCGTCAAGAAC 58928 29 100.0 32 ............................. CCGCCGTCGGCCGCCGCCGGGCGTACTGCCGC 58867 29 100.0 32 ............................. TACCTCCCGGTCGTCACCGAAACCGATCACGG 58806 29 100.0 32 ............................. ACCAGCCGCAGCCACTCCGAGCACGACCGTCC 58745 29 100.0 32 ............................. GGCTACTACGCCCGGCTCGGCGTGCCGCCGAC 58684 29 100.0 32 ............................. CCATCGTCTGGCCGCGCTTGGGGACGACGCCA 58623 29 100.0 32 ............................. GCCTGGCTGGCCGACCCCGAGGGGCACGACGA 58562 29 100.0 33 ............................. GATCCTGGCCAGCAGGGTGACCCCCGCGCCGAT 58500 29 96.6 32 ............T................ ACCCGGGACGGCGAGGCCAGTCGGTGGGGGTT 58439 29 100.0 32 ............................. CCCTCCTGCGCGGCCGGCCGCGGCATCCGCGA 58378 29 100.0 32 ............................. CTTCGCGCCGCCGGCGTCCGCGCTCCAGGAGT 58317 29 100.0 32 ............................. TCGGCGTTCCAGTCTGGCAGTTCGGCGATCTC 58256 29 93.1 93 .....................G.A..... CGCGCGGGCCCGGCCCTCCGGCTGACACCCGCCCTGTCGTCTCCGTACCGCGTGGGTCGTTCAGCCGGCCGCGGCAGCGAGATGGGCGTCCTG 58134 28 86.2 0 ........G..A.........-.A..... | G,T [58130,58132] ========== ====== ====== ====== ============================= ============================================================================================= ================== 23 29 99.0 35 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CAGCACCTGTGCTCCCCGCACCTACTGCGAGGGCTTCACCTCGGCTATACCTCTGGCTGCGCCGAGCAGGTGGCTGGCCGTGCTGCCCAGCTTGCGGCGGGCCTCCAAGTTCTGCGTCATGTGTGGGCAGCTTCGGCTTGGGTTCGATCTTCTTTCTGGGGCCTGAGACTGTCCAGGTGTGCCGGAAATGAAGAGTGGGTTGGGGGCGGCCTTGGCTGAGGCGTTGTCTCCTTCTTGGACGCAACGTGCTTGTGCCGGGCGTGCTCTTGCTTCCCGTGCTCCGTTGAGCCGAGTCGGCCTGCCTGTTGTCCGGTGCATGCAGCGGCCCCCGGGGGCGTAGACGGTTATGTCGGGGAACACGTGGGCGCGACTGGGGTGGGGTCACCAGGTCAGCCAGCCGCGCTACTGTCGCCTCTTGTCCCGATGTGGGCGTTTTGCTGGTTTCGGTGAAAGTGATGAGAATCGGGGTCTGTCGTGGGTAGAGTCGCAGGTCAGCAAGT # Right flank : CACGCCTAGATGTGCGACTCCTGGGACATCAAGCCACCGCCCCGGCGAGCTCCTGGACCCGGTGTCGGGCGCACACGCTGCGGCTCGGAAGAGGCGGGCGGCCGCACGGGACGTTCCCGTCCCGGCCCGAGCAGACCCGCTCCGCGCTCGCGCCGGAAGCCGGGGGCGCCTGAGCGGCGGCTTCCTCCCGGCACAGCTTGCACAGACCGTCCTCGAGGGCCCGGCCGGTCAGCATGATCCGCGCCCCGCAGTCGCCGCAGGAGCCGCGCGGCGGACCGTCCGGGACCCGCTGCTGCACCACCATGGCCGGGGCCGGCCTGGCGATCGCGTCGTCCAGCTCGCACGCGGCGCACTGCCCTGACGGGCCGGGTCGGGTGCCGTGCTCGGTGCACAGGCCCTGGGCGATGTGCTGCTCGCGCTGCCGGGCGGCGGCCTTGTCCTGGACGACCTCCGTGCAGATCTCGCACGTAGCGCCGGTCCACCAGATCACACCGGTCTCG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61018-60122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGT010000016.1 Streptomyces sp. DH12 NODE_16_length_162326_cov_30.290970/1-162326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 61017 29 100.0 32 ............................. GGGGCGTCTTCCTTCATCGCGACGGTCGCGCC 60956 29 100.0 32 ............................. GAGTACTCGACACAGTGGCGGGACCTGGGCCT 60895 29 100.0 32 ............................. TGCCCGCCGGACGAGCTGGCGGATGGCGGCGC 60834 29 100.0 32 ............................. GTCCCCTACGTGCGCGAGGACATGGGCGTCGA 60773 29 100.0 32 ............................. CCGGGCCGAAGCGTGCGGCCCCGGGCCGGGGT 60712 29 100.0 32 ............................. CTGCCGTGGGCCAGCAGGAGCGACCACGGGGA 60651 29 100.0 32 ............................. CGTCCGGGGACAGGCGCAGGGTCTGCACGGTC 60590 29 100.0 32 ............................. GTACGAAGGGGTGACCAATGGCGAACGCGCCT 60529 29 100.0 37 ............................. CCCCCCCCCGCGGGTGCCGCCCTCACCGATCGGACCC 60463 29 96.6 32 .........................T... GCGTTCAAGTACGTGTTCATGTCGGAGTCCAT 60402 29 96.6 32 .........................T... CCCTCCACCGTAAGCGCTGAGTCGGTCGTTTG 60341 29 96.6 41 .........................T... ACCCCCTCCCACGGCGGGGCTCGATGTCCCCGAGGGGCTGG 60271 29 89.7 32 ............T............T..T TCCTGCGCGGTGGTTATGCGGGCGCCGAGGCA 60210 28 89.7 30 ..........G...........-.....G GGTCAGGAGCCGCCTGGCGGCCGCTGGGCC C [60201] 60151 29 79.3 0 ...T..T.....T...T..A.....T... | G [60124] ========== ====== ====== ====== ============================= ========================================= ================== 15 29 96.6 33 GTGCTCCCCGCCCGCGCGGGGATGGCCCC # Left flank : GGGACGGTTCCTTCACGTCGGGGTTCTTGGCGAACAGGAAGCGGTGCTCCCCGCCCCTGGGGATGGTCCCGACGACCCGATGGAGAAGGCGACCGCCATAGGCTGCTCCTCGCCCGCCCGGGGTGTGGTCCCTCCCGCCCGGATGCGGCGAGCCGTGGCGGCGGACTCGTCTATGTGCAGGAGCGCGTACGGATGAATGTTGCAGACCATGGAGCCCTATGAAGCGCAAGCGTCGGCCCTCGGGCGGCACCCCGGGCACCGGCCAGGAGCGCCTCCTGCGCCTGCAGCGGCGGACCCGCCCGCCGGCTCCCCTGCCGAGCGGCCTTCTCGACTTGGGTAGCCGCCGGCCCGGCGGAAGGCGGGCGCGGCCGGGGCCGGGCCGCCGGAGACCGGCCAACCGCGCTCACCAACCTTCTTGCCCCGTTTCAGGTGTTTTGCCGGTTTCAGTGAAAGTGGTGAGAATCGGGGTCTGTCGTGGGTAGAGTCGCAGGTCAGCAAGT # Right flank : GGCCGGCCGCCGCCCGGCACGTCTACCGGATGGGTTCCCGAGTTCGCGGAGGCGGTCCCGGCTCCGACAGGAAACCGGAGGCCAGCACCTGTGCTCCCCGCACCTACTGCGAGGGCTTCACCTCGGCTATACCTCTGGCTGCGCCGAGCAGGTGGCTGGCCGTGCTGCCCAGCTTGCGGCGGGCCTCCAAGTTCTGCGTCATGTGTGGGCAGCTTCGGCTTGGGTTCGATCTTCTTTCTGGGGCCTGAGACTGTCCAGGTGTGCCGGAAATGAAGAGTGGGTTGGGGGCGGCCTTGGCTGAGGCGTTGTCTCCTTCTTGGACGCAACGTGCTTGTGCCGGGCGTGCTCTTGCTTCCCGTGCTCCGTTGAGCCGAGTCGGCCTGCCTGTTGTCCGGTGCATGCAGCGGCCCCCGGGGGCGTAGACGGTTATGTCGGGGAACACGTGGGCGCGACTGGGGTGGGGTCACCAGGTCAGCCAGCCGCGCTACTGTCGCCTCTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGCCCC # Alternate repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 63909-62601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGT010000016.1 Streptomyces sp. DH12 NODE_16_length_162326_cov_30.290970/1-162326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63908 29 100.0 32 ............................. CGGAGTTCGCGGGCGTGATGGACATTCAGGAC 63847 29 96.6 32 ............................G ACCAGCTCCACGAGGAGTACGGGGTGACGGCG 63786 29 100.0 32 ............................. GAGCAAGAGCGAGTTGATCCTCGCCGCCGCAT 63725 29 100.0 32 ............................. AGGTCCGAACTCCCGGTCAGCGCGGCGCCCTG 63664 29 100.0 32 ............................. GGCCCGGCCCGTCGTGACGTCGAGGCCGAACT 63603 29 100.0 32 ............................. ATGGTTTCCGTGTCGAGGAATCCGGCGAGGAC 63542 29 100.0 32 ............................. TTCGCGCCGACCTCGGCGATGGCGTTACCCGC 63481 29 100.0 32 ............................. CGCAGTCGAGCGGTCGCAGACCCGACGAGTGA 63420 29 100.0 32 ............................. GCGATGCCGGGCCTGATCAACGTCATGCAGGC 63359 29 100.0 32 ............................. CTGGCGTCCTCGACGGCGCAGGCGAGGCGGTG 63298 29 100.0 32 ............................. TGGGCGAGGCCGTCGTCCATGCGGACGGTGGT 63237 29 96.6 32 .........................C... ACAGAGGGTCTACGAGACGATCCGGTCGTGGA 63176 29 93.1 32 .......T.................C... CCGAAGGGGTGAGCGGGCTGGGCCTGAGGCTC 63115 29 96.6 32 .........................C... TTGGGGTCGGTCGGGTCGAGGGCGGCGAGCTG 63054 29 96.6 32 .........................C... GACCGCACCAGTCCGGTCAGGCTGTCGATGCG 62993 29 96.6 31 ............................G GCGTGCTCAGCCGACGCATCGCGGACGTCGT C [62967] 62932 29 93.1 32 ...........G.T............... GCGCGGTGCGCGTCCCGACCGGCGGGCATCGG 62871 29 96.6 32 ............T................ CCCACTGAGATCCAGGCGTTCGCCCGGGAGGT 62810 29 100.0 32 ............................. CCGGACCCGGTGGACCCGATCACCCCGCCGAA 62749 29 100.0 32 ............................. CACCTCCGGATTTTTCGGAGGTGGTTGGCCAT 62688 29 79.3 31 ...A......TA.CT....T......... GGGTCCCGGACCCTTGCCGCAGCACCGGCGG 62628 28 79.3 0 .C.........G.CT.....-....A... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 96.6 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : CAACCCCGCGGACCTGGAGGCGTGCTCCCCGCGCCCGCCGGAGGCCGTCGTCCTGGAGTGCTTCCCGCCAGCGCGAAGATGGTCCCTCCACCGGGATCATCCGCGCTAACTCCGACGCGTGCTCCCCGCGCCTGCGGGGGTGGCCCGCCGGCCTGAGGGCACCCTGCTGCATGTGGGGTGACCTCTGGTCCGAGCGGGACGTGGAGTCTGTAGAAGTTTCCGCCCGCGTGCATGTCGTTCGAGCGGAACCCCGGTCACCGGTCGGGATCGCATCCTGTGCCTGTAGGTGGAATCGCCTCCGTGCTTCCTTGCCAAGCAGCCTTCCCAGCTCGGCGGCTGCCGACCTGAAGCGGAACGCGGACGTGGCCGGGGCCGGGCCATCGGAGGACGGTCAGCCCGTGCTCACTGCCACTTCTTGTCCTGATGTGGGTGTTCTGCCGGTTTCCGTGAAAGTGACGAGAATCGGGGTCCGCCGCAGGTAGAGTCGCAGGTCAGCAAGC # Right flank : GTCACGCTCTCCCGGCCGCACAACAGGGGCGCTATCCGCTCCCACGCCGCGTCCGTCAATTCACCTCGACCCGCCACAAGATCAATTATCCGGCACGCCTTAGGGTGCGCGGGTGGCCCCTTCTGACGCTGCATCGAAAACACGTTTTCTGGTCATGCACGACTACGGCATGGGCGGCACCTGGTGGTGGGTCCACGCCCGGTCCGAACAGGAGGTGCTGGAGACCTTCGCCGGCGTCGAAGTCGTACACACCGAGGCCACCCGCGCGGAGGCCGAGACTTGGGGTCTTGACGAGGCCGACGTCGACGGACCGACCACACCACCCGGCTTGGCCGAAGCCCGAGCCGAACGAGACACCCAGCGCGGCATGCCGGGCTTCGGCACCCTGGCCGGCCAGCACCTGCTGTACCTGAGCCGCCGGTGGGACGAGGACGACGACCCGATGGTCTACCTGATGGAGGTCGACCCCGACGGTCGTCGGCTCCGCCAGGTCGAGCTGA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 64880-64263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGT010000016.1 Streptomyces sp. DH12 NODE_16_length_162326_cov_30.290970/1-162326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================== ================== 64879 29 89.7 158 .C......T....A............... GAAGAGACCGCGGACACCGCCACGAACGGGGTCGGGCCATCGGAGGTCGGCCAGCCCATGTTCACTGCCACCTTCTTGTCCTGCTTCAGGGGTTTTGCCGGTTTCGGCGGAAGTGACGAGAATTGGGGTCTGCCCCGGGTAGAGCGCAGGTCAGCAAT 64692 29 93.1 32 ............T........G....... GCGCCCACCGCCGCCCCGCCGCCACACCCCGA 64631 29 96.6 32 ............T................ CCGGTCGGCCGGTGGAAGTACGGCGAAGGCGA 64570 29 100.0 32 ............................. ATCGACCGGTACGCCCTGTGAGACGACGACCT 64509 29 100.0 32 ............................. TCCTGGGGAAGGAACGACACCGCGAAACCGGC 64448 29 89.7 68 ......T....G.C............... GCCTACCTGTTCAACCCCGCGGACCTGGAGGCGTGCTCCCCGCGCCCGCCGGAGGCCGTCGTCCTGGA 64351 29 86.2 32 .....T......A.....AA......... TCCACCGGGATCATCCGCGCTAACTCCGACGC 64290 28 82.8 0 ...........G.CT......G...-... | ========== ====== ====== ====== ============================= ============================================================================================================================================================== ================== 8 29 92.3 55 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : CAGGGCGATGGGCGCCGCTGAGCGGTTCCTTGTCGAGCACCAGTCGCTCTTCGACGAGGCCGAGCACGGCTCGAGGCGGGGTGGGCAGGCCGCCTGATGATCCTGCACATCGACGTGCCGTGGATCTTGCAGGTCGCCGAACTCGCCGGTGCCGGCGACCCGGCGCCGGAGGACTACGGAGTCCCGGTCGCTGCGTGCGCCCGCCACCAGGCCGAGCTTCTGGACCAGGCCGTCTACGACGGCCCCTACACGAGAGCGGCTGCCCTGGTGCACACGCTCGGCCGCTGCCGCTGGTTGGAGCGCTCCAACCTCGCTGTCGCCGCGGCGACCGGCGTGATGTACCTCGAGGCCTCGGGCATCACGGTCAAGCCCTCCACCACTGACGCCGCCGCCCTGCGAAACCTCCTGGTCGACCCAGCCTGCACCGCCCACCAGATCGCCCACCAACTACGTTCCTGGCCCACCACCACCTAAGCCGAGATATACCGCGCCTAGCTGCG # Right flank : GCCGGCCTGAGGGCACCCTGCTGCATGTGGGGTGACCTCTGGTCCGAGCGGGACGTGGAGTCTGTAGAAGTTTCCGCCCGCGTGCATGTCGTTCGAGCGGAACCCCGGTCACCGGTCGGGATCGCATCCTGTGCCTGTAGGTGGAATCGCCTCCGTGCTTCCTTGCCAAGCAGCCTTCCCAGCTCGGCGGCTGCCGACCTGAAGCGGAACGCGGACGTGGCCGGGGCCGGGCCATCGGAGGACGGTCAGCCCGTGCTCACTGCCACTTCTTGTCCTGATGTGGGTGTTCTGCCGGTTTCCGTGAAAGTGACGAGAATCGGGGTCCGCCGCAGGTAGAGTCGCAGGTCAGCAAGCGTGCTCCCCGCCCGCGCGGGGATGGTCCCCGGAGTTCGCGGGCGTGATGGACATTCAGGACGTGCTCCCCGCCCGCGCGGGGATGGTCCGACCAGCTCCACGAGGAGTACGGGGTGACGGCGGTGCTCCCCGCCCGCGCGGGGATG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-2.16, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 65905-65632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGT010000016.1 Streptomyces sp. DH12 NODE_16_length_162326_cov_30.290970/1-162326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65904 29 79.3 32 .AC.A......GT.............G.. GGCGGCGTGGCGACGGACCCATGGCGGACATG 65843 29 100.0 32 ............................. AGCTCCAGGGTCGCGGGCCACGCCCACTGACG 65782 28 93.1 32 .....-......T................ TGACGTGCGCATCGACGTGTGTCGGACCAGGG 65722 29 93.1 32 ...........G.C............... GGGTCTGCACTCCCCGTGGGCCGCTCGTGCGC 65661 29 86.2 0 .....T....TG...........A..... | A [65639] ========== ====== ====== ====== ============================= ================================ ================== 5 29 90.3 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : CGGCGATCCCAGCATGGGACCATCCCCGCGCGGGCGGGGAGCACAATCGATCGCGTCCCAGAAGTGGAAGGCGCACGGGACCATCCCCGCGCGGGCGGGGAGCACGCGAACTTGAACGTCACGTCGTCGATGACGACGGGACCATCCCCGCGCGGGCGGGGAGCACCAGCTCCGGGCCGGCCTCGATGAGTCGGACCAGGGACCATCCCCGCGCGGGCGGGGAGCACACTTGCTGACCTGCGACTCTACCTGCGGCGGACCCCGATTCTCGTCACTTTCACGGAAACCGGCAGAACACCCACATCAGGACAAGAAGTGGCAGTGAGCACGGGCTGACCGTCCTCCGATGGGCCCAACCCCGGTCACGTCCACGTCCCGCTCCAGACCGGCGGGCGCGGAGAACACACGACGAAGCTGTAGCCGGTGTCCGACCAACCGGGGCCACCCCCTCAGGCGCGGGGAGCACGATAGGAACGAACGGTCCATTGCCTTGTCCGAGG # Right flank : ACGGTGCAGGACCAGGAGAAGCGCTCCCGCCCGCGCATGGGGAGGGGGCGAGGCGCCAGATGCGGTGGGAGCGGGAGCTATGGCGCCGCATGGTAACGGCTGTTACCATGCGGGTATGGCGAAGACACAGCTCGGTGCCAGGGTGGATGCGGAGATCGCTGAGCTGGCTCGTAGGCGGGCCGCTGATCGGGGGATGTCGGTGGGTGACTACCTGGCCCAGCTGGTCGTGGACGACGTCAGCGGGCTGCGCGCCAGGGCGATGGGCGCCGCTGAGCGGTTCCTTGTCGAGCACCAGTCGCTCTTCGACGAGGCCGAGCACGGCTCGAGGCGGGGTGGGCAGGCCGCCTGATGATCCTGCACATCGACGTGCCGTGGATCTTGCAGGTCGCCGAACTCGCCGGTGCCGGCGACCCGGCGCCGGAGGACTACGGAGTCCCGGTCGCTGCGTGCGCCCGCCACCAGGCCGAGCTTCTGGACCAGGCCGTCTACGACGGCCCCTA # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 68818-67997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGT010000016.1 Streptomyces sp. DH12 NODE_16_length_162326_cov_30.290970/1-162326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68817 29 100.0 32 ............................. GTGGCGCTCGGCGGCGATGTGTTCGGCGAGTG 68756 29 100.0 32 ............................. ATTGCCTCCGGCGACAGGCCGGTGAGCAGGAC 68695 29 100.0 32 ............................. GGTCCCAGACGGCCGTCCTGCTGTTCGGTACG 68634 29 96.6 32 ............................G TATCTCGGGTCCACGTTCTGGATCCCGAAGTA 68573 29 100.0 32 ............................. CACCCGCTTGTCCACCGCGCCGACGGCGGGGA 68512 29 100.0 32 ............................. GGCCCATCGTTGCCGAAGCACTCATTGGGCAT 68451 29 100.0 32 ............................. CTCGCCGCCCACACCACCGCCATCGCCTTCGA 68390 29 100.0 32 ............................. TCACCCACCCGCAGACGGACGCTCAGCCACGA 68329 29 100.0 32 ............................. CATCCTGCCCCAGACCGAGACGCAGGGCACCA 68268 29 100.0 32 ............................. CACTTGTTCGACAGGTACAGGTCATGGCCGTT 68207 29 100.0 31 ............................. AAGCACTCGCGGTGATCAGCGACCAGCCGCA 68147 29 100.0 32 ............................. TCCGAGGCCGCGCCGTCGTTCAGGAGGGAGCT 68086 29 100.0 32 ............................. CGATGCCGAGTTCGGCACGCAGGCGACGTAGA 68025 29 82.8 0 ..............G.......GCA..G. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GGCGTTTCCCGCCCGCACGACGAAGTCCCCCAGGGGCGAGCGCGCGATTGCCTTCCCGAGAACGCTCCCCGCCCCGTGCGGGGATGGTCCCGTGGTAGACGGTCAGAGGCAGTGACGGGGGTGTGCTCCCCGCGTCTGCGGGGGATGATCCTCGCGGGTATGCCGTGCCCGGGAGGGCGTGTCATCCGAGCAGGAGTGGAGTCTGCGAAAGGGCCTCCCCACGTGGCGGATGCCCTCCTAGCGACCCCCTGGTCGCGGCCGGGAGCACTTCCCCCCTTTTAGGGCCAGACCCGCCTCCCCGTTCGCCTACCAAGCAGCCTTCCGAGCTTCGGCAGCCGCTGGCCTGCTCGGCGGAACGTGGACAGGGTCGGGGCTGTGCCGCCGAAGGTCGCCAGCCCGCGCTCACGGCCATATCCTGTCCCGCTGTGGGCGTTTTGCCGGTTTCAGTGAAAGTGGCGAGAATCGGGATCTGCCGTGGGTAGAGTCGCAGGTCAGCAAGT # Right flank : TCTGCCCGCAGCACCGCCGCGCAGTGAGCGGGACCATCCCCGCGCAGGCGGGGAGCACTCCCGGTCCTTCGTCCGGTCCGCCAGGTCGGCGGGACCATCCCCGCGCAGGCGGGCAGCACGTCGACGTGCAGGGTGCGGGCCGCGGTACCGAGGGACCATCCCCGCGCAGGCGGGGAGCACATCGGCGCCATGGCGGTCCTGGTCTACCGGACGGGACCATCCCGCGCAGGCGGGGAGCACGTGCTGGCAGGGCTGGCGGTGGCCACCGTGGTGGGACCATCCCCGCGCAGGCGGGGAGCACCGGCCCGCCGGTCCGGGCAGCAGCGCGGCCAGGGGACCATCCCCGCGCAGGCGGGGAGCACGAGAGGACTCACCAGCCTCCAGGGCTCGCCCGGGGACCATCCCCGCGCAGGCGGGGAGCACTGGCCACGTGGACCGAGCGCGTCGACTGGCTGGGGACCATCCCCGCGCAGGCGGGGAGCACGTCCCCGTACTGACGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 79806-78864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWGT010000016.1 Streptomyces sp. DH12 NODE_16_length_162326_cov_30.290970/1-162326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 79805 29 100.0 32 ............................. TGGCTCGGCGGAGGAATCCTCGCAGCAGGGCG 79744 29 96.6 32 ...................A......... ACCGCCTTCACCGCCCCCTGGCCCACCGGCAT 79683 29 100.0 32 ............................. GCCTGAGGCGAGGTGCCGCCGCTGATGCCGGA 79622 29 100.0 32 ............................. GAGCGCGACGACATGCCGGCGAAGCGCGGCGG 79561 29 100.0 32 ............................. GCGACCCCCGACGAGAACGGCAACCTCGGCGT 79500 29 100.0 32 ............................. ATGGTCGGCATGGCGACGAGGCGGTTTCCGGC 79439 29 100.0 32 ............................. CATCACGTGATGATCAACGACGGCCGGACCGG 79378 29 100.0 32 ............................. AGCCACGACTTCGGCATGTGGAGGATCCTGTC 79317 29 100.0 32 ............................. CGGAGCAGCATCGGACAGGCGGTCCGGCTCTT 79256 29 96.6 31 .....G....................... CGCAACACCTCCCCGTCTCGTGGTCGGCGCG 79196 29 96.6 32 .........................C... TTCAAGCCGGTCTTCAGCGACACTCTCGGCAG 79135 29 93.1 32 ......T.......T.............. CTTGTGCGGTACTACCGGACCGGCTGGCGTCC 79074 29 79.3 32 ..........TCA.T......GC...... GGCTCCCTCCCACTCCATGCGTACGGGCGGTG 79013 28 75.9 34 ...TC....C..........AG.A.-... TGGGCCTCGCGCACGGTGTCTGTTGCTGCCCGTC 78951 28 75.9 30 ..C.C....C....GTT.......-.... AGCGTCCGGTTCCGCCTGCTCTCGGGCGCC T [78945] 78892 29 79.3 0 A.......A.G..GA.....A........ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 93.3 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCTGGCTGGTGTGGTCTGCCCCGATCCCGGCGCACTCGCCGAGTGGCCGGCGGAGTTGACGATCCTGGTGCCGAGCCAGGGCTGGCTCTCTCGCATTCAAGCCACTGCCCGGTCCCCGCTGAAGGTCGCGGTACTGGACCCCCTCATTGGACGCAGCTCCTTCGTACGCCTCACTCCGGTTTCGAGTGGTGCCCCTGTGAGCCCCAATGGGCCTGATGAGGCGTGACGCGCGACCGTGCGCGGTCTGCCTGACCGACACCGAACTCGCCGTCCTCAACGCCGGATAGCTGACCCGCAGAACACCGGCGGCACGGCGGCGGCCCTGCCCGAGACAGGGGGCGCAGCGGCCCGGCGACGAGGGCTGCTCCTACACCGAGGGCTGCCGGGGGCGTCTCCACGCCCACTTAAGACATGCTGAGACGGATTTACCCTGTTTGCCCGAATCGGCGAAAGTGATGAGGAATAGGGCTAGCGACCCATAGACTTGCAGGTCAGGAAGC # Right flank : CGTGGTGCCCACGTACGTGCGCTGGGCAGTCGAAACTTCGACATGCTCTCTGGGCTTGGTGGAAGCGCTTGCCCTTGCGCGCCCCTCAGTTCGACTGCTTGCCTGGGGGTGGCTAGTACTGACTATCTCGTTCCGAAGCGCCGTCGCTTGGAGGCGCGGCTCCACCCGATTGTCGGGGGAGATGGTGGTGCTTCGGTTGTTTGGCTGGGACGCCGGATGAGTGTGAGGCCTTCGTGGTCGACCGGGTGCCACTTGTGATCGTGGGTGCGGAAGGCGAAGCCTTGTTCTGTGTTGGTGGTGTGGGCGAGGAGGGCGCGGCCTTGGCCCGTGTGCTGCTGTACTTCGTGCCACAGTGTGTCTCGGACGCGGGAGGAGGGGCTCCCGATGAAGACGCCGGGGGAGATTTCCAGGAGCCATCGGGTGAGGAGCCCTCGTAAGCCGGCTGGGAAGTTGGTCAGGACGATGACGGTCACCAGAGGTCCTCGTCGGCGTAGTTCCTG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //