Array 1 474623-477091 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBG01000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 43845 NODE_2_length_703966_cov_56.859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 474623 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 474684 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 474745 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 474806 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 474867 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 474928 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 474989 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 475050 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 475111 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 475172 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 475233 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 475294 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 475355 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 475416 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 475478 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 475539 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 475600 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 475661 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 475722 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 475783 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 475844 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 475905 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 475966 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 476027 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 476088 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 476149 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 476210 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 476271 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 476332 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 476393 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 476454 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 476515 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 476576 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 476637 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 476698 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 476759 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 476820 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 476881 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 476942 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 477003 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 477064 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 493763-497336 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBG01000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 43845 NODE_2_length_703966_cov_56.859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 493763 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 493824 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 493885 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 493946 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 494007 29 96.6 32 .............T............... TATTACCCTTTCAGAATCTTTTTTGGATTGCT 494068 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 494129 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 494191 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 494253 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 494314 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 494375 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 494436 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 494497 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 494558 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 494619 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 494680 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 494742 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 494803 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 494864 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 494925 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 494986 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 495047 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 495108 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 495169 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 495231 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 495292 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 495353 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 495414 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 495475 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 495536 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 495597 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 495658 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 495719 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 495780 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 495841 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 495902 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 495963 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 496024 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 496085 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 496146 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 496207 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 496268 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 496329 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 496390 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 496451 29 100.0 32 ............................. GCGACGCGGCGTGGTTTTAACTGGCTGCGGGG 496512 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 496573 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 496634 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 496695 29 100.0 32 ............................. TAGAGAAGGGGAAAGGCGAATTTATCCCTTCC 496756 29 100.0 32 ............................. TTGTTCTGTCGCTGTCGTTAAACTCTCCGTAA 496817 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 496878 29 96.6 32 ............T................ AGATCGCCAACGCGCTCGGTTTGCGTCTGGAA 496939 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 497000 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 497062 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 497123 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 497184 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 497246 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 497307 29 96.6 0 A............................ | A [497333] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //