Array 1 17805-16862 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ672971.1 Thermus tenuipuniceus strain YIM 76954 Scaffold30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17804 29 100.0 33 ............................. GGGATGAGGTGCGGGCCGTGATTCTGTACTGGG 17742 29 100.0 32 ............................. CTCACCATCGGCGAGGGGGTGAGCGTGTACGC 17681 29 100.0 32 ............................. CGTTGACCGCGCTGTTGGCCAGGTTGATGAGC 17620 29 100.0 31 ............................. CGGGCAAGGTGCCCTGGTAGGGGCGGGCGGA 17560 29 100.0 32 ............................. CCGGTGCTGCGCTTCGTGTTCGAGGACGATGA 17499 29 100.0 32 ............................. AACGTTCCTGACCTTACCACATTTCTGGCAGA 17438 29 100.0 32 ............................. GGGGAAGGCGCTCTGGTTGAACGCAATCCCAT 17377 29 100.0 32 ............................. GGGCGGGGATCATCCCGGTTGCAGATGTCTAC 17316 29 100.0 33 ............................. GAGATGGGGACGGGTAGGGGGCCCTGGCACACC 17254 29 100.0 31 ............................. GTGGCCTGGTACCTGCAGCTCCTCTGGTACG 17194 29 96.6 31 ............................T ATTTTTAGTGGACAGAGAAGACCCGGCATAT 17134 29 96.6 32 ............................A GGATTACCACGAGAGGGTACGGAGGTGGCCCC 17073 29 100.0 32 ............................. GTGCACCACGGGTCCTGGAGACGCCCACTCAG 17012 29 100.0 32 ............................. TCCCAATACTGCCGGTCGTCCCATCGCGGGCG 16951 29 100.0 32 ............................. GGGGAGTCCCTCCAAAAACCTCAGCACCGCAC 16890 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GGTCTGCCCACCAAGGAGCAGGTCCTCGAGGCCTTGAAGGTGGTCTATGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGGCTGGTCTACGATGTGGAGATCCACGAAAACGGGGTGGTGGACCTTACCATGACCCTTACCGCCATCGGCTGTCCCGCCCAGGACATGGTGAAGGCGGATGCGGAAATGGCAGTGATGCGTCTGCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACCCCTCCCTGGACCCCTGCCCGGATGACCGAGGAGGGTAAGCGCATGATGCGCATGTTCGGGTTCAACGTGTAGGCGGCTGGGTAGGGTGGTATAGTAGGGCTCGAGGTGCGAGGGAGGCAGGTGGGTCCATAGGTGTCTTGATGGATGCGCACCCAGCCTTACGTACGGGGATCTTGACAGTTAATCCTTAGACTGGTTCCCTTTACATAGACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGGTCAAGT # Right flank : AGAAAGCCCTTCTCTTGTCCTTTCCCTGCCTTGCCGGGATGGGTTTCTATCACCCCGGCTGATTCACTCAAACCTGTCCCCTTCCGTCTTAGCATGGGCCTGGCCTGGACGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCCTGGGGTGGAAGAAAGCCCAGAGGTAGCCGAGGAGGAGGGGAAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGACCCAGGGCCATTTTCCCCGGGGTTGCCCCATGCGAAGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTAGCCAGTTGAAGAGAAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGGGGAACCAGGATGAGACTGTCAATAAGGGAGGCCACGAGCCTGCGCCAGGGGCTTGCGATCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20644-19946 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ672974.1 Thermus tenuipuniceus strain YIM 76954 Scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20643 29 100.0 32 ............................. CCCAGCGCTGGACGAGGGCCATTCAGCAGGTC 20582 29 100.0 32 ............................. CTGGTCCTTCAGCGCCCCGACTCAGGTAGAGC 20521 29 100.0 32 ............................. GGCCACCACCACCATTGCAGGACGGAAGTACC 20460 29 100.0 32 ............................. CTGAGCGCGCGTTCAGGGCCGCTGCTCGCGCC 20399 29 96.6 32 ............................A TGTGGTGCTCAACCTCACCTACCGCGGCCACA 20338 29 100.0 32 ............................. CTGACGCTGCGGGGCAAGGGAAAGCGGGGAGT 20277 29 96.6 31 ............................A GAATGGCGAGCATCGGACGCTGACTGGTGGA 20217 29 100.0 31 ............................. GTCCTCCAGCCTAGCATTCACGGCCTCTAGT 20157 29 100.0 32 ............................. CGGCCCGCATCGCCGAGGAAGCGGACCGCAAC 20096 29 100.0 32 ............................. GTAGGCCAGGGCAAACCCCTGGTAGTTCCGTT 20035 29 100.0 32 ............................. TTCCGCTCCCAGGGCAGCGATTACCCTGTCCA 19974 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GGGCCAGTTTTTCCAGGGCGCTCCCATACTGTCGGGTTGGGGCCTGGTGGTAAAGAAGCCTCCCCGCCGCGAAGAGGGCCAAGGCCTCCACAGGGTGGAGGGCAGGCGGGGCATCCCTCAGGCGGTAGCGCCCCCAAGCCACCCGCTCCAGGGGGTAGCCCTGGAGGACGAGGGCCTCGAGGTCCCGCTCCACCGTGCGGGGACTCACCCCATAGCGCCGGGCCAACTCGGCCACGCTGTAGGGCCTGAGTTTCAACTCTTCCACGAGGTCCAAAAGGCGCTCGGCTTTGGGTTTTCCTGGCATCCTGGGCGAATTATAGCTCAGGGATATGGTATCCTTAGAGGCAGGGGCTTGCTGTTCCTTCTCCTCAGCCCTACTGGCCAAGTTGCTAGAGCGGATCTTGACAACCCGAACCCGAATTCGGGGTATTGCTTGGAATAGATCCTGTAAAATACCCTTAGAAGGGGGGCAAACGAGGTTTTTGCCGTTCTGGTCATGT # Right flank : ACTAGAGGCCGAAACCGGTGAGCAGCAATTCCACCCCAAAGGTCAATGGATTTCAGCGAAGGCCTGGCGAACCCTCGCTAGGAGGACCTCGGCATGGGCCAGCGCTTCCTCAGCCTCTTCACGGGTGTAGGCTTCCTTTGGGATCAAGCCGGGCAATGCATCCGGATAACGGGTGGGTATGTAGAGCTTGTCCAAGGCCAGGGCTAAGGAGAAAAAGGGTGCGAACCTCTTCCCCCACTCCCCTGGTAAGTCACGCACAAGTCGGGCAAGGCTATGCCCCCAGGGATCCAAGCCTAGAGCGAACCAAAGGCCCTTTAGGGCTTTCTCTCCGGCCTGTTGAGCCATAAAAGCGGCTTGAGCGTGCTTGCCTACCGTCAGGAGAACCCTGCCGGCCTCCAGGTCATCTTCGGCCTGGAGTAGCCAGCGCTCCCCTTCAAGCCGCCTCTTTTCCACGCTCATAAAGGGGCACAGCCTCCTTTAGAATCCCCCGTAAGAAGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30444-30960 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ672974.1 Thermus tenuipuniceus strain YIM 76954 Scaffold35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30444 29 100.0 32 ............................. GCGCTCCTCCAGGCGGGCCAGGAGCGCTTCAA 30505 29 100.0 32 ............................. TTAGAATAGCCTCCACCATCCCGTCGATGAGG 30566 29 100.0 32 ............................. TGGTCCGGGGCGTCCGGGTGGACGGGCTGGGA 30627 29 100.0 32 ............................. GTGGCCCGGGCCCGCACCACATCCAGGACCCA 30688 29 100.0 32 ............................. GTCGGCTCTGTTTACGGCCCATATGCCAAATC 30749 29 100.0 32 ............................. CTGGGTGCCCTTCGCTCCGTCAAGATTTCTCA 30810 29 100.0 32 ............................. CCCACCCGTCCACCATCTCCCCGTCCGATCCC 30871 29 100.0 32 ............................. ACATGGTAGTTGAGGGACCCACGAGGCTTCGC 30932 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GAGGAGGCCAAGGAGGAAGAAGAAGACCCCACTCGCCCTGGGGAGCTTTGGGACCCGGAAGGGGAAGTGGAAGGGGGCGTGGCTTATGGTGGTGATGATCCTGGAGAAGGTACCGAGGAGCCTGAGGGGTGAGCTCACCCGCTGGCTTCTAGAACTAGACACTGGCGTTTTTGTGGGGCGGGTGAGTGCTGTGGTGCGGGATCTTCTCTGGGAGAAGGTTGTGGAGAAGGCTGGGGATGGTCGTTGCGCCATGGCCTGGCGTACGAACAACGAGCAAGGCTTTGCTCTAAGGCTTCACGGTTACCAGGATCGTTCTTTGCGGGACTTTGATGGTATAGTATTGGTGTCGGTGCGCACCGCCGAGGCTTTGCGTAAGGCTGAAAAGCTAAGGCGCATGGCCAAGGCAACGCGCGGGGATCTTGACAACGCAACTTCGGAATAGTTCTCTTTACAAACCCTTAGCAGGGGGTAAGAAGGTGTTTTTGCCGTCTGGGTCATGT # Right flank : GAAGCCCAGGGAGTCGTCTAGGGTCAGGTAGCGGCCGTATCCCAGGCCGCGCACCAGGATGCTCTTCCCCACTGCCTGGCCCCGGCGAGGAAGACCACAGGGGTGTCCTGAAGGGCCTCGAGGAGATGGTCGGTGAGAAAGCGGGGGAATTCTACACCCAGACCTCGCGGAAAATCTACGACTATCCCGCAAATATTCTGCGACCTTAGCACAGGGTTTGCTGGCAAACATAGAGGGACCTATCGGTTCCTGGGCACGGCCGGGCACGTGGCCTATGTTTTCATAGGCCCCACATGTCTTATCCCTATACCTTGGGGAACTCTTTCGGGAACCCGCGCAACCGCCTTCGGGTGCCGGGTGACTAAGAGGCTGTCGTAAAAGTCTCCCACCTCACCTTACGCGGCCCTCGCCAGCCGCTTCACCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13355-15656 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ672959.1 Thermus tenuipuniceus strain YIM 76954 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 13355 36 100.0 38 .................................... GATGCCCTTGTGCTGCAACATCACGCCGACCTCCTCAA 13429 36 100.0 37 .................................... CTCAGCAAGGGCCTGCGCTTCTTGACGGGACTCTTCG 13502 36 100.0 38 .................................... CGGCAAATCCGGCCTGGAGGACAGAGCCTTGACTATCT 13576 36 100.0 43 .................................... GAATGAGGTAGCCACCGGTGAGGGGGGCAGAGGCCCCCCAGGA 13655 36 100.0 39 .................................... TCTTCCCCGGCAAGAGGGTGGCCCGGGTAGAGGAGCAGA 13730 36 100.0 40 .................................... ACCCGTGCGTGGCGATGGGTCCCAAGAGCGAGGCCAGCCG 13806 36 100.0 36 .................................... TTTCTCTCGCTTAAGCTCCATCTTCTACCTCCCCCG 13878 36 100.0 40 .................................... CCCGCATGTAGGTGCGGGAGGGGACCCTGATGGAGTCCCC 13954 36 100.0 38 .................................... TGATCATCGCCTCACCTCCAGGCGAGGCCGGTAAACCC 14028 36 100.0 44 .................................... GGCTCAACGCGCGGCCCTTTACGCCGCTTGGCGGGCTGAGCCTG 14108 36 100.0 39 .................................... CTACGTCCGTGGACGCGGTAACGCCGCCCAGCAGTTCCT 14183 36 100.0 42 .................................... TGAGCCCTTGCGGACCGCTACCGCTACCTCAGGTAGCGGTAA 14261 36 100.0 40 .................................... CAGGTGGCCGCCCCCAGGTCCTCCTCCTCCTCGAACAGCG 14337 36 100.0 37 .................................... ATGGTCATCGCCGAGGGGGAATGGCAGAGACGCTATC 14410 36 100.0 38 .................................... CTCAAGGTTTATCATGACTCACCCCCCTTCTCCGGGAG 14484 36 100.0 38 .................................... GGGGGACATAAGTCCAGAGCCCGCTCACGGATTGGCTT 14558 36 100.0 37 .................................... CGGGATCAGGGACATAACCCTGACCCAACAGGGTAGT 14631 36 97.2 38 .G.................................. CAAGATAGAGGCTATTAGCCTCTTCTGAAAGTTCCACC 14705 36 94.4 38 AG.................................. GGGGCCGCGCCCCCGGGAGAAAGGACCCAGAATATCCG 14779 36 94.4 41 CG.................................. AGCGTCGGCCCAGACGGCCTTCACCTTATCGTTCATCCCCG 14856 36 94.4 40 AG.................................. GCGGCGAAGCTCCCGCTCGTCCGCCCCCTCCTCCACGATG 14932 36 94.4 38 AG.................................. AATATCCGCCTCCACCTGGTCTAGGTCGGCAACGCTAG 15006 36 94.4 40 AG.................................. ACGGGGAGCTTGAGCTCCCCGGCCAACTCCCGCACGAGGG 15082 36 100.0 41 .................................... GACCTCAGGGTGCAGCACCGCGTCCCGCACCCTCCTCTCTG 15159 36 100.0 41 .................................... ATTACCTCGCGAGGAGCCTCCCCCGCGAGCCTTTCAATGGC 15236 36 100.0 43 .................................... CCCCCGCGAGCCTCTCAACCGCGGCTTCCCACGTGGCTAGTTG 15315 36 100.0 40 .................................... ACGGCGGTGCGAAAGCCCACCACCTGCCCCACCTCCACCT 15391 36 100.0 42 .................................... CGGAGCCACCCGAGGGCCCAGTCCACCTGCCGGGCGCTAGGC 15469 36 100.0 40 .................................... CTTTCCGTCGTGGTCACGGCCTCGGTGTCTAGGGCATCCC 15545 36 100.0 40 .................................... TCGGTCGCGTCCCCGAAGACGGTGACACGACCGTCCACGA 15621 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 31 36 99.0 40 GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : CTGCAGGAGGCCACGCATCCGCTGGGTTTCCGTAAAACCTACGGGGAGCTCCTGGAGGTGCAGGCTGCCAGGCTGAAGGCCGCCATCCTTAAGGGGGAGCCCTACACCCCCTTTTTCCTTCGGGGTTAGGTGGGTGGGGCCCAATACTGTACTTATCTGCCTTGTTGCGCTGCTAAGGATACTGCGGAATCCGTAAGTATTGGAGCGTGCGTGCTGCACGGTATTTATTTGGTATGGCTTTGACTCACTCCACCATCGCAGAGAAGTGGTATAATCCGGGTGTCCGGTTAGCCGGACGGGGATCTTGAAAGCCTGTTTTCCTCTTGCCCAAGGGCAATATGCATTTGCGCCTTCTTATCGTCCCTTCCTCCAGTGGCTTTGCAAGAGGCTAAACCTTGCGAAACCCCCCTTATTCGCCATGTGTATATTCCAAGCTTCATACTTCTCACAAACCCCCCTTCTGGGAGCATTGTCTGGGACGGTGTTCTTAGGGGGGTACA # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCTTACGACATCCCCGATGACAACCGCAGGGTCAAGATGGCCAACCTGTTGAAAAGCTATGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTAGACGAGAAGCTTTTGGAAGACCTCAAGCTCCGGGCCAGAAGGCTTCTAGACTTCTCCCAGGACGCCCTGCGCATCTACGGGGTCTGGGGGGAGGTGCAGGTGCTGGGGGTGGGACCGGTGTACGAGGAGCCAGGCTTTGACGTGGTGTGAGGGCCAGGTACCCTACCGGGGCCTGCGCCACGACGAGGCCCCTAAAACAGAGCCCTGGCTTTCCGACCCATGTCTGGCCTGGCGCCTGCCCGTCGGTCCTCGCTACGGCAAGGGCCCCCAGTGCGCTTTGACGAGGATTTTGGGCGCTTCCCTGGCCTCACGTTCCTTCGGCTTCCAGGCTAGCCGCCCCCACTAGAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //