Array 1 98998-100485 **** Predicted by CRISPRDetect 2.4 *** >NZ_FEUX01000002.1 Neisseria meningitidis strain 2842STDY5881228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 98998 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 99064 36 97.2 30 ............A....................... AATCAGACCGACTTTACAACGAAGGTTTGA 99130 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 99196 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 99262 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 99328 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 99394 36 100.0 30 .................................... CCGACCGTGGGAACGACGGTATAGTGGATT 99460 36 100.0 30 .................................... TAAAAAGATACTCATTCTGCCTCCGTATTA 99526 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 99592 36 100.0 30 .................................... TAACGATTGAAAATGAGTACGCATTAAGTA 99658 36 100.0 30 .................................... GAACACTTGAGCAATTTAATACGCGAACAA 99724 36 100.0 30 .................................... TGATTCTCGCCTATATGAAACGGAACAGTT 99790 36 100.0 30 .................................... TCTATCTTAATTTCTCTTTGTTCTTCTTTA 99856 36 100.0 30 .................................... CATTGCGCCCATTTTGTCTATCCGAACAAT 99922 36 100.0 30 .................................... ACCACCGCCGCTTATATAGAAAAGCTGTAA 99988 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 100054 36 100.0 30 .................................... TAATTGATTTTTAAGGTTAATCAGTTTTTG 100120 36 100.0 30 .................................... CTATTTTCCTGCACCTACAACCCCCGAACG 100186 36 100.0 30 .................................... CTTTCTGTGCGATGTATTGAAAAAGCTGAG 100252 36 100.0 30 .................................... ATGCTGGATACGGCATTGATGCTGCAACTT 100318 36 100.0 30 .................................... TTGCAATCCAAGGCTTCAAAATGGCTTGGA 100384 36 100.0 30 .................................... CGCCTGACCTAATATAACCATATGGAAAAA 100450 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //