Array 1 52134-53381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUL010000037.1 Salmonella enterica subsp. enterica serovar Augustenborg strain FW-S5-Jan NODE_58_length_279334_cov_77.080101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52134 29 100.0 32 ............................. AACATTGTCATAAATTTTTTTCAGTCGTTGGA 52195 29 100.0 32 ............................. ATGATTTTGGCTTTTTCCAGCCATCAGATATT 52256 29 100.0 32 ............................. AATAGCGGCAGGGGGTACGAGGGTTATTTTTT 52317 29 100.0 32 ............................. GCAGTTCGGAGACCAGGAATATACCGCCGCAC 52378 29 100.0 32 ............................. CCGACTCATATCAGGTAGCGTGCGCTAACGCT 52439 29 100.0 32 ............................. GAACAATGGCTGACAGAAGCTGCGGAAACGTA 52500 29 100.0 32 ............................. CGGTTGCTACCGAACTGGAGCTGTGGGCGCTG 52561 29 100.0 32 ............................. CACTGGATTTGAATTATTTATTTCACTTTCAA 52622 29 100.0 32 ............................. GACTCGGTCTGTTTTTTGATTTTGGCAATCAG 52683 29 100.0 32 ............................. GACGTCGCTATTGATCGGGAAAAGGAGCGTCG 52744 29 100.0 32 ............................. ATCCGCTCCATGTCTTCGGGCAGTTGGCTACA 52805 29 100.0 32 ............................. CGCATTATGATAAAGTTCCCGCCCGTAACTCA 52866 29 100.0 32 ............................. TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 52927 29 100.0 32 ............................. AGATGGTAAAGGTGCTGGTCGCCGCGACTGCT 52988 29 100.0 32 ............................. TCGAAACTACGCACGCCGTGTGCCGTGGGGAG 53049 29 100.0 32 ............................. GCCAGCGCTGGCGCGCTCGCGAAATGGGAACC 53110 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 53171 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 53232 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 53293 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 53354 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69678-70744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUL010000037.1 Salmonella enterica subsp. enterica serovar Augustenborg strain FW-S5-Jan NODE_58_length_279334_cov_77.080101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69678 29 100.0 32 ............................. AGGACATCGGGTCGCGGGTTCAGATTATCCAG 69739 29 100.0 32 ............................. ATATTGATGTAATGACGCGACTTTGCACCAGT 69800 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 69861 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCATTC 69922 29 100.0 32 ............................. CGCAAACAAGACTGGCAAATACAATTAGGTGC 69983 29 100.0 32 ............................. CTCGACGGCGACCCAACGCAACTACCAGATCA 70044 29 100.0 32 ............................. AGTTGGATAAAGAGGCGCAGGAGAGAGAGCAG 70105 29 100.0 32 ............................. CCAGGTTAACAACTGCCAGATATTTGGCGTGC 70166 29 100.0 32 ............................. ATCGTTGTCGTTCGCGTGGCTGAGGGCGAGGA 70227 29 100.0 32 ............................. CAAATACGTATACCGATAATGCATCGGCTCAA 70288 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 70349 29 100.0 32 ............................. ACCAATAACAAACTAACAGGTGTAGAGCACAA 70410 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 70471 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 70532 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 70593 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 70654 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 70715 29 93.1 0 ............TC............... | A [70742] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGAGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATAGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //