Array 1 52-1606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPC01000039.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 113 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 174 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 235 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 296 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 357 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 418 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 479 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 540 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 601 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 662 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 723 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 784 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 845 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 906 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 967 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 1028 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 1089 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 1150 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 1211 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 1272 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 1333 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 1394 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 1455 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1516 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1577 29 93.1 0 A...........T................ | A [1603] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGGCGGGTGAAGTTACCTCCGAGGGCTTTCACGAG # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 171239-172854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPC01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171239 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171300 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171361 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171422 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171483 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171544 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171605 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171666 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171727 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171788 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171849 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171910 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171971 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172032 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172094 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172155 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172216 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172277 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172338 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172400 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172461 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172522 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172583 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172644 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172705 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172766 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172827 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189362-190427 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPC01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189362 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189423 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189484 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189545 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189606 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189667 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 189728 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 189789 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 189850 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 189911 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 189972 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190033 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190094 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190155 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190216 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190277 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190338 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190399 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //