Array 1 403093-403916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACI01000001.1 Bibersteinia trehalosi Y31 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 403093 32 100.0 34 ................................ TAAGTAGCTCTCAATCCACGCAAACACTTCCAAC 403159 32 100.0 34 ................................ CATATAGTTATGACAGCAAAGCGCGTTACCAAAT 403225 32 100.0 35 ................................ TTTGTCTGATTGATGTAAGGCGTCATCAACTGCTC 403292 32 100.0 34 ................................ TCCTGTTATTTAAGGTGCGTTAGCACGCACCTTG 403358 32 100.0 34 ................................ TTCGCACACCACGTGAACCCGCTGTCCGGCTTGC 403424 32 100.0 34 ................................ CGCAAACGGGTGAAATACGCCCTAATTAATGCAA 403490 32 100.0 34 ................................ ACAAAAAATTAGATGAATATCATCAAGAATTAAC 403556 32 100.0 34 ................................ TCGCCCGAATCGTCACTTTATCCGGCGGGCCATC 403622 32 100.0 34 ................................ ACGTGGCGAAGCGCAAGAAGTTCAGCTTGGTAGC 403688 32 100.0 33 ................................ ATTAGCACCATTTAAGCAATTTTGTTTTGCTTG 403753 32 96.9 34 ................A............... TCCGAACATCTTGTCCCTCCTTAAAGTCGGGACA 403819 32 100.0 34 ................................ ATCAGGACGCTTACTCGATGAAAATAAAACAAAC 403885 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 99.8 34 GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Left flank : ATGACTGTCGATCTTGGTATTAATAGTAATGATAAAGTGGGGGATGAAGCTGAGCTTTGGGGGGAAAATTTGTTAATTGAAGAAGTCGCTAATGCCATGGGGGTAATCAATTATGAATTAATTACCAAATTAACCCCAAGAGTGCTTTTTGAATATCTTGATTAACGCTAGCACATTTAAATAATCTTGTAACATCATTCAAAAAAAGGATATTACACAGCGTTGAATAGTTTGTAAAAAATTCCCTGAAATAGACCGCTTACATAAGATAAAGCAACATTCCCCCCTAATGTTTCATGTTTATTTCTCTTCTCGCTAACCCTCGGTTCTCAGCAAAATACCAAGAGGTTAGCGATTTATTATTTCCCTTACGAATCAAGTTGTTACAAACTTCCATCATATAACAGATATTATGCTACACTGTAAATCAATCCCCATATTTTAGGCTAGCGAATTGTTAGGGTTTAATCCTTGTGACGTAATGCTTTGAGATATAGGGA # Right flank : CTTAATGGTTTTGCATACCGTTACCCCCTCAAGTAGCAGCTACCTACGGGTAGCTGCCATTCTATTTCTAGCAAAGATGAATGTTACTCAAACAAATCTCCAAGCAAGAATTGCAATACCGAATCCATTCTTAAGTGAGGAAGAGCTTGGTCAAAATCGATTTTTCTAGGTTCAAACTGATCGAAATCGAAGGTATGATTTTGCCAAAAATCCGAATTCGGTAGCCGATTGGGGACGCTCCCTGCAAACTGAGTTACCTGTCGCTTATCCTTTGTCCGTACCCCTCGAATAGCTTTAAAGCTCTGCCCATTTTCACTCACCGTCACGGCTTCGGTCGCTCGAATTGCAGAAATGGCTTGATAAGCTGTTTCAATCCCGTCAAATTCAGCATGTCTGCCACCTTCCTGCACTAACTGTCGCATAAGACTTTCTAAATTTGGAAGTTGATCACTTGTGATGTGATCGGCTTTAGTTGCGGCAAATAGAAGTTTATCAATATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 485893-485143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACI01000001.1 Bibersteinia trehalosi Y31 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 485892 37 100.0 36 ..................................... TAATGCCCTTTAAAATAGTTTAGTAATTCTGATTTA 485819 37 100.0 35 ..................................... CATTTAGGGGCTATCCGCTTAACATTCTACATAAG 485747 37 100.0 33 ..................................... CGCAATAGCTCCGCTATAAATAACATCAGCGAC 485677 37 100.0 34 ..................................... TGTGCTCTTGCCGGATTGCTTTTAAGTTTTTCGG 485606 37 100.0 35 ..................................... ATAATCAAGGAAAGTATATTCTGTATCCCAAATAT 485534 37 100.0 34 ..................................... TCAGTGTTAAAAGATGTCCAGTCGCCAAATATCA 485463 37 100.0 33 ..................................... AAATCCAGTTACCGCATACTTCAATCACAACAC 485393 37 100.0 35 ..................................... GTTTTATTTGCTAACGGTAATAAATATACACGAAG 485321 37 100.0 32 ..................................... AAAACCTCTTCTTCTAGCTAAATTCAAAATAG 485252 37 100.0 36 ..................................... GTCAAACTCAAACCGTCCTTTGCTGATAATATCCAA 485179 37 83.8 0 ...................T..T.........T.TCA | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 98.5 34 GTCGGAAGACATAGCCCTGATTCAAAGGGATTGAGAC # Left flank : AGTCCAAGCGATATGAGAGCAAGACATAATTTTCAACGGGATATTAGAGCATTATCTGCTGAAAACAGGTGATTTTGTTAAAAGATGCGGTATTGCGAGCAAAAGCGGTGAGTGAACAAATAGGCGTGCGCGCATTATTAGTACACGCGTTAAATGAGCAAGCCAAACACTTTTATTTGAAATATGGTTTTAGCGAATCATTAATTGATGAAATGATTTTAATGTTACGATTGAGTTAATACCTGGTAGATAGCGCTAAGTGATTTTTTTGTAAGGCAAGCGGTTAATTTTATATAAAAAAGTGTAAAAATGACCGCTTGTCTTTTTGGGTGCAAAGAGAACAAAATTTTGCTAGAATTTGCACCGTTTTTTGATTGCGATTGAGAATGTGAAAATGGTTAAATTTTCATCAAATCAATACCTAACTATTCAGCTTGCTGAAATTTTTGGGAAGTGTGTTTGTAACTTATTGAATAATAAAGGAAAAAACAACCTCTGCA # Right flank : AGATACTCGCGGTCAGTTTTTTGCAAAAATCTGCAAAATGCTGGCCGCTTGTTTTTTACAAATTTGTATTTTCCGCTTTTCCTTTTTCTCTCCGTTATACTGCTCTCATTCCAATTCAGAGGAGAATAGCAATGGATACTAATCGTTCTAGATATTTAGTTGCTTATGATATTTGCGATGCCAAAAGGCTTTATCAGGTGCATAAAAAGGTGGAAGCCTATGCCATTGGCGGACAAAAATCCTTTTATGAATGTTGGCTTACCCAGCACGAGCTTATCCGTTTTAAAGCAGAAATTGGCGAGATAATGGAGAAAAACGAAGATCGGCTAATGATTTTTCAGCTCCAACGAGATGCCGAGCCGCTCTTATTTGGCAAAGCAAAATTGCAATCTATTCAACCTTTTATGTTAGTTTAGGAGGCATTATGTCTAGCTTGTATATCGACCGTAAAGGCACAGAAATTAGACTTTCTGGGGAAGCATTAGTGTGCTATGAAAACA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACATAGCCCTGATTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 508351-505655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACI01000001.1 Bibersteinia trehalosi Y31 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================================== ================== 508350 32 100.0 34 ................................ GTGTCGGGACATCAGTCAGTGGTAAGCGGTAACG 508284 32 100.0 33 ................................ CTGTAGATTACTGGGAAGAACATTGGCACGAAG 508219 32 100.0 34 ................................ GCTTTAAAAGGCGATAAGCTATATTGCTCCTTTG 508153 32 100.0 34 ................................ TTAGAACAATCAGACAACCCATCAGAATATGATT 508087 32 100.0 35 ................................ ATCTGATACCTTGTTTGCTTTTGAACAATACACTC 508020 32 100.0 33 ................................ AGGGCAAGGCATTTTTGTACAGGTAAAGTGGAC 507955 32 100.0 36 ................................ CTCCACGGTATCTTTGGCAAAATAACGCAAATTGCC 507887 32 100.0 33 ................................ TGCTTCCACATCGCTAAACAGCTTGTGCGGTGC 507822 32 100.0 37 ................................ TTTGTTAAAACGGTAGCCACAACGACCATATGTTGCC 507753 32 100.0 37 ................................ AGGATAGTGCGGATACGTTTAGGGGCTATGGGCGTAA 507684 32 100.0 34 ................................ TTCATGAACTTGCCCTTTGGTTAGGCGGCGTAAT 507618 32 100.0 35 ................................ TGATACGACTAATCAAGGCGGATTTGAAGAAACTA 507551 32 100.0 36 ................................ GATACAACCTTTGGTGGGATGGGAGCTGGCTCTATT 507483 32 100.0 36 ................................ TAGTTTGTGGTTGCATTTGCTTTCTCCTGTTGCCAC 507415 32 100.0 33 ................................ ATAAAAGCAACGCCCCGAAACCAGTGATTTCAG 507350 32 100.0 34 ................................ CACTAAAAAAGCTTTTGTCGTTGTGTCAAAAAAA 507284 32 100.0 35 ................................ CTGATTGCTTTTAGGTTTTTCGGAGTATACCCCAG 507217 32 100.0 33 ................................ CGAGAAAGGAACAGCACAAAACCCTTTTACTTT 507152 32 100.0 35 ................................ ATTTTACCAAGAACGATGTGAACACAAGCGTAACC 507085 32 100.0 34 ................................ TGGCACAGGTGCCGTTAAACGTTGATAGAAATAA 507019 32 100.0 34 ................................ TTGTAAAAGCGGAAGGTTTTGAGCTTTCAGGTTC 506953 32 100.0 34 ................................ GCCAAATCGCCCCGATGAGCAAATGAGTGCGTTT 506887 32 100.0 34 ................................ TTAATAAAGTTAACCTTTGTAGCCTTTATTTTTT 506821 32 100.0 33 ................................ GCTAAATGACGACAGGTTAAAAAGGTTTCATCA 506756 32 100.0 34 ................................ CATGTCTTCTGCGAGTTCCGACTGTGCAATCAAA 506690 32 100.0 35 ................................ AAATCCAACATAAGCTGAGCTATGTCAAACCAACT 506623 32 100.0 36 ................................ TGCTTGCAAAATCGAAAGCCGAAGCATAGAGTGTAA 506555 32 100.0 33 ................................ CACCTGCTCCGCTTTCGGTCGTTTGCAGTTAAA 506490 32 100.0 35 ................................ TCATTTATGTTTAGCCCGCTTATCCGCTTTGGGTT 506423 32 100.0 34 ................................ TATGCGTTCGTCATCTTCAATCAATAAAACCATT 506357 32 100.0 34 ................................ TACTTCCTAAATTGAATTTACCAGTAAAGCAAAC 506291 32 100.0 34 ................................ TAATAAATTCGCACGAAACGCTTTTGCTACAATA 506225 32 100.0 33 ................................ TGCAGGACGGCGCGAATGAGATTACAGGCAGCT 506160 32 100.0 36 ................................ GTAGCGTTTCATATTGAAGGAATGATTGAGGACGGG 506092 32 100.0 34 ................................ TGCGAATTGGTAAGACTACAACAACAAGGAGCAA 506026 32 100.0 34 ................................ AGAAACTATCCGAGTAAACGGCGGTTCTGTGCCT 505960 32 100.0 34 ................................ AGAAACTATCCGAGTAAACGGCGGTTCTGTGCCT 505894 32 100.0 35 ................................ CAGCAGGGGGCGAGTATATAAGCCTGTTACTTCGG 505827 32 96.9 110 ..........T..................... TATCTTTGGTAGAATGTTGGAGAACCGCAGGGAGGCAGCCACCTAGTCTCAGCCATCTATGCATGGGGAATAGAAACAGGAATAGGGTGCCAGAAAATTACTTTGTGCGT 505685 31 75.0 0 .T......T.T.T-....T.....G......T | ========== ====== ====== ====== ================================ ============================================================================================================== ================== 40 32 99.3 36 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : AGGAATTGGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCAGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTACGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACCCCCGCTCAGTGGGTAACATTGAAAAATAAATTATTGACAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGTGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAACCTGTAGTTCTCATAAAAATGCTGGAAGGTTAGCGAATATATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAAGTACAGTATATTGGCGATATGCTATACTTTTTTTCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAAAATGTTATCTAGTAGGGA # Right flank : ATAACAGGGCAAAGAAAGAATCTACAATAAAAAATACATCTTTTTGACTAGATTGTATTATAAGCATATTTCAGCATAACGAATAAAAGATCACCAAGCGGTCATTTTTTTTAGATTTTTTGCAAAAAAGCGCTTGCAAAGGGTTTTGAAATCTCTATAATGCACGTCATCGCAACGACGCACTGTTGCAAAGATAAAATTTCCAGTGCGTCGTTATTTTTTGTTCTTTAACAATATATCAGACAATCTGTGTGGGCACTTGTTGATTGATTAGTTAAAAATATTTTTTAATTTTGAAGTCTTAATAGGTGCTTAAACTAGAAATTCATTACTTCTATTTAATAGAAATAAAGCGATTTATAGCTAGCAGTTATTGAGCGATTAAACTTTTTGAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAACGGTAGCACATAGGAGCTTGCTCCTTGGGTGACGAGTGGCGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1127841-1126944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACI01000002.1 Bibersteinia trehalosi Y31 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1127840 32 100.0 35 ................................ TGCATGACCAGCAACTTAACCCTGCGATTACCCAC 1127773 32 100.0 35 ................................ CAAGAATATATGCTGTTTTATGAAGAACAGCCATT 1127706 32 100.0 33 ................................ CTTATGGTTGGTTTTACCCGCAAGACGGGCGTG 1127641 32 100.0 34 ................................ AAAATTTAGGTGGTGGTGAGTTCTACGCGGACAT 1127575 32 100.0 34 ................................ CCTTTATAGAGATAGAAGCCGTAGTGACCAGGGT 1127509 32 100.0 35 ................................ TCCCATTCGTCCCAAAGCACCATATTGTCCGGAAA 1127442 32 100.0 35 ................................ ATTGATGACATCCTTGGGTAATCTGGGTTGAGCGG 1127375 32 100.0 35 ................................ CAAAGCATAACGATACATAATGCGCTTAAGCTCTC 1127308 32 100.0 35 ................................ TACACTTGCAGCGAAAAAATGCTTGCTATTAGACT 1127241 32 100.0 34 ................................ ATCGTGGCACCTCCCGAAATTCAATAGGGATTTC 1127175 32 100.0 35 ................................ ATCACATTGACGATTTACCGAAATTGTTTTGGACG 1127108 32 100.0 35 ................................ TGTTATGACAGTAGCAGGTGCTATTGGTAAAGCAA 1127041 32 100.0 34 ................................ AGCATTGAAGAAATTATTGCAGGCATACCAACGC 1126975 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 14 32 100.0 35 GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC # Left flank : TCAACGATGATGATGCTGATTACTTACGATATTTCTTTTGATGATGCCGAAGGGCAGAAACGCCTACGCCGTATCGCCAAACATTGCCTCGACTATGGTATTCGCGCTCAATATTCGGTTTTTGAATGCGATGTCACACCCGATCAATGGGTTAAACTCAAACAAAAACTCCTCGATACTTACAATCCTGAAACAGACAGCTTACGCTTTTACCATCTCGGTAGCAAATGGCGTAATAAAGTGGAACACCACGGCACCAAGAAAGCGGTAGATATTTTTAAAGATACATTGATTTTGTAATATTGGGAACATCGCTAACGTCTGGTTCTCATCAAAATACGAGGAGGTTAGCGATTTTAATTTGTCCTTTAATAATCAATCAGTTAGAAATTTCTCCGAGTACTGCACATCTTATGTTACACTTAAATCACTCCTTTTATTTCAAGTTAGCGAATCACAGAGCGTTAAGCCTTGTGGCGCAATGCGTTGAAATATAGGGA # Right flank : ATCTTGAAGTATATCTGGATAGCGTCTCCAGCCTTGCAGACTCCACCACGTGGTTGTCGCTTGAAATATTGCATAAGAAAACACAAAACAATCTATATTTTCTGCTGAAGTAGCTAAATATCCGTTATAATGTCGCCATTTTTCATCTTATCTTAGAGTAAAAAATTATGATGATGCACTACTCCTCTCAATTTAACCATGCAAAAGTATTAGTGCTTGGTGATGTGATGCTAGATCGTTATTGGTTTGGATCCACAAATCGAATTTCCCCTGAGGCACCGGTTCCTGTTGTCAAAGTGCAGGAAAATGAAGAACGTGCAGGTGGTGCGGCGAATGTCGCGATGAATATTGCTGCGCTTAATGTGCCTGTCACCTTACATGGCTTAGTTGGGCAAGATGATGCAGGTTCAGCATTAGATAAATTATTAAACTCTCACCAAATTCAAAACCACTGCGTAGCGTTGGATAGCCATCCAACTATCACTAAATTACGCATTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1137269-1136376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACI01000002.1 Bibersteinia trehalosi Y31 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1137268 32 100.0 34 ................................ TAGAGGGGTAAATGATGACTAACATCTATCTAGC 1137202 32 100.0 34 ................................ ACGGATACAGAGAGCTTAAATCTGTTACGCACAG 1137136 32 100.0 36 ................................ CAGGCCCTTGAACGTGTCCCCCTTTCGCAAAAGCAA 1137068 32 100.0 34 ................................ TACGCTGAGCATAATCCGCCCGATTGCCATCATT 1137002 32 100.0 34 ................................ CACATAAATTTCACGGTAGCGACGTAAGTTATTG 1136936 32 100.0 33 ................................ TCTGCATTTTGGTATCGGCTAACATACAGCGTG 1136871 32 100.0 34 ................................ ATGGCACGCAAGATCCGATTATCAGCCAAAACAA 1136805 32 100.0 35 ................................ ACTGCAGAAATACTTGCTCTTGCTGTGCTTAAACG 1136738 32 100.0 34 ................................ CACGTTACAATGAAATGCTTAATGTTAGGATATT 1136672 32 100.0 34 ................................ CATAACTGGAGGGTGGGCCAGCAGAGCAAAACCG 1136606 32 100.0 35 ................................ CACCGCAACAGGCTGTCTAACCTGTGGGGCAATCA 1136539 32 100.0 34 ................................ GCGTGACACGGCTCATCTTTTCTGATGTCCTTAC 1136473 32 100.0 33 ................................ ACTTTCATAAGGCTGTCTCCTTCGATGATAGAA 1136408 32 90.6 0 .........................C.A...T | G [1136386] ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 34 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Left flank : AATCCTCCAATTATTGTGATTCACGGTAACCAAATTGAGCGTTTACCAGATAGCTATAAACGTTATTTATCAAATTATTATCGCAAGAGCCTAAAAATTATCGGCTCACCGATTCGAGTGCTATTCCAAGAAGGTAACAACCCCTTTGCCGGCAAGCGCAATAAACTCACACCAAGCCAGCTTCGAAAACGTAAACGCTTGATGAAGTTTATTAAGAAAAATCGGAAGTAACTTATTTGCACCTCAATATTCTTAGTATTGAGGTGCTATTTTCTATTGATTTTCTCAATATATCCTACCGATGTATAATTCGCTATCTCGGAGTTCTCTCCAAAATCGTATTAGGTTAGCGAATTTCATTTTTCCTCAATAATTCAATATGTTAGCCTATTCACGCTATTTTATCTTTAACCTTATGCTATACTGAATCAGCCTATTTTAGGATATTAGCGAAAAAGAGGTTTTCGAGCCTTGGTTTGTAATGCTTTTTACCATAGGCA # Right flank : ACTTTTTCCACAAACAAGAGTCTATTTAATGCTTACTCTATATTGCAAAATAATATGTATATCACAACGTCTCCTTTGATTAATCTAGATAGCATGCGATCTTAGGAATAGGCATTGTAAGTTCTTGTATATAATTGTAGTATACATCATCCATTCTCTGCATAAATTTACGAGCTTTAATGAGTAAGACCGAATTTATCGCCCATATTCGAAAATCTAACAAACAGTTACAGTCCGTTTCAAACCATCTTTTAGAAACTGCCTCAATCGCAAGAACTTTGGCTGCTAAATTAGATTTAGCTGATGCTGGGGAATTACTCGGTTTAATGCATGATTTTGGTAAATATTCTAAGAAGTTCCAAACATATATTCGCCACGTAACCGGTATTTTAACTTACGCGGATTTAGATAGCGAAGATGAAAATAATGGAGGGGATCATTCAACTGCAGGCGCTCAATGGATTTATGGCCGTTTAAGAAAATTGGGCGCAGCTAAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //