Array 1 741695-743063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066023.1 Corynebacterium amycolatum strain FDAARGOS_991 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 741695 28 100.0 33 ............................ TGTGCTGCACAACAAGGCGGTTATTACGCGGGC 741756 28 100.0 33 ............................ GCATTGGGTGTTGCGTGATGATTTTCTTCGTCT 741817 28 100.0 33 ............................ GCGATTAAGAGCATTGACTAGAGGTTTGCCCCT 741878 28 100.0 33 ............................ GCTTGAGGACCGGCTCGATAGCGTCGAGAGTCG 741939 28 100.0 33 ............................ CGGAGCCTCCACCGAGCCGAACAGCTGCTCGCC 742000 28 100.0 33 ............................ GTTGTACACATTGCCCATCTCGGATGCCGCAGT 742061 28 100.0 33 ............................ GCCCCTGCAGCAGATTTTTGCGGGGCTTCGTCC 742122 28 100.0 32 ............................ CGGGCCTGCAAGCGTCGCACCAAGACGCCAGC 742182 28 100.0 33 ............................ TTAATCCGCTTCACAATCCGGTCACAATCCCGC 742243 28 100.0 33 ............................ GAATCATGGTCAGGGTCAGGCTCATCCGTCGGC 742304 28 100.0 33 ............................ TATGTCGCTTGCTGATGAGGTTAAGGAACTGAC 742365 28 100.0 33 ............................ GGACGGGTCGGGACGGGTCGGGACGGGACGGGT 742426 28 100.0 33 ............................ GGACGGGTCGGGACGGGTCGGGACGGGACGGGT 742487 28 100.0 33 ............................ GGACTCTGACTGGATTCCTCGCAGTGCAGTGAG 742548 28 100.0 33 ............................ CCGGCACCAAAACTGCAATCCCCAAAGGCCAAG 742609 28 100.0 33 ............................ GCTTCCCGGTTTTCACGTAAACGTCGTGTGGTT 742670 28 100.0 33 ............................ CCCAGACGAGGAAAATATGCTGCCCCGGGACTA 742731 28 100.0 33 ............................ GGTCAAGGGTCATCAGCTGCGCTGTTGCAAAGT 742792 28 100.0 33 ............................ CTGGGCGAGCGGTTCGGTGCTGGTGTCCAATCC 742853 28 100.0 33 ............................ GCACGGCCCGCAAACGCGCCACCTGCCCACCAA 742914 28 100.0 33 ............................ GCAGCACCGTCAGCGGAACCCTCGGCAGCGTCA 742975 28 100.0 33 ............................ CGACCTCACCGGCAAGACGCAGACGGTCACCAG 743036 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 33 GTTTTCCCCGCGTGAGCGGGGATGTTCC # Left flank : AAACGAGGAATTCGGTGAAGTTATCGAATTGTGGGATTACAGCCGCGGCACGATTAAAGGTGGTACAAACTACTCCTCCGGAGAACCACCATGGTGACAATAGTTTTGACGAGCTGTCCTGCCGGATTACGGGGCCATTTAACTCGATGGCTTGAGGAAATCGCCCCAGGTGTATTTGTTGGGAAAGTTAACTCTCGTCTCCGTGACATCTTGTGGGGCCTGGTCATCGAAATGGTCGGCAGTGGTCGTGCCATAATGGTTTATCCGGATCGGAATGCCGAACAAGGGTATGCCTACAAGGTGCATCGTCACGACTGGGAGGTCGTCGATGTCGAGGGGCTGTCCCTGATCCGGCGTCCGTTCAAAAACAGGACTAAAGGTGATGTCGGATTAAAGTCGGGATGGTCAAATCCGGCTAAACGGCGTCGTGCCCGACATGCTCGTCGTTCGGAGTGATATAAAATTCTTCATCGGGAACCGAGCTCTGCTGGTTAATAAGT # Right flank : CGATTTGATTATGAGGGGGATAGTATCCCCGCGTAAACACTCAGAAGGGTAAAGGCATGACGAAGTATTGGGATCACAACGGCAGTATCTACAAAGACGACGGCCAGGAAGATTGGTGCGTTTACAATCCGTCTTTGCGTGATTGGGAGCGCACCCCGCGCGCTAAGGAAGCCTACGACAAGGCAGGCCAAAACTCGTTCGACCCCATCACCGAGCAGCAGGCACTCGTCGATATTGCAGAGCAGCAGGAACGCTACAACAAAAAGATTCAGGACAAAATCAAGGAACTGCGCGCGAAAATGAAAGCTGTCGGTGCGCAGGCCAGACAGGCTGCTGAACAGCCGTACCCAACCTTTGCCGAGCAATCTGCCGCATACCGTGAGGGTGCGCAGGCCTACAACGAGGGCAAATCTTGGCGCGATAACCCGTATGCCCCCGAGTCAGGTCTAGCCACCCCGTGGCGCATGGGGTTCAATACCCGCAAGCAGCAGGTAGCGGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGAGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 991004-990794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066023.1 Corynebacterium amycolatum strain FDAARGOS_991 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 991003 28 100.0 33 ............................ TCGACTGGGGAAATTCCCCAGTCGGAAACGAGG 990942 28 100.0 33 ............................ CCTTTATCAGGGTGGTCAAATTGACCACCCTGA 990881 28 100.0 34 ............................ TCAGCATTGCCGTGGGGTGGCGATTCACCACCCC 990819 26 82.1 0 ...........GA.....--...A.... | ========== ====== ====== ====== ============================ ================================== ================== 4 28 95.5 34 GTAAGCCCCACATGCGCACGGAAGCTAA # Left flank : GAACGCCGCGACCGCATCGGCCACGAAACGCACAACAACCAGCACTAACAGACCCAGGGGAGCACCCCCTCCCCCAAGGCTTCTGTCGCCCGGAAGGCAATGACGCTCCGGGTGCGCCTGGGTCAGGGATTTTCGAGGGAAGGTTTTTTACATGGCGGACATGAATGCGAAGTCTGATTATGAGGCTGCTTTGGTGGAGCAGATTGGTCAGTTGTCGGAGACGATTGGTGTTTTGTCTGAGGCTGTTCGGGAGTCGCCTTTGGTGGTTGGTTCTCGTAAGCAGCCTGTGGTGAATCCGGCTGCTCGGGAGTTGGCTGGGTTGCATCGGACGAAGGCTGATTTGGAGCGGAAGCTGCTGAGTTGCCGTAATCCGTTTATGCGGGTTTAGGGGGTGTTGCAGGAGGCTCTGTGAGCGGTTGGAGGGTGTTAGGGTACGTGCTCCCGTCGTTTAACCGCTTAGAATCGATTTGCGAACAGGGGGTTTGCGCAGGTCAACGAGG # Right flank : GGTGGTAGTGATTCACGATCCCCTTACGGTCGCGCACGTCTCCACGCGCACGGGCATGATCTTTAGGTCGTGATTCCGACCTGCCAAGCAGCGTTACACTTCAGCATCTTCCCAGTGAGCTCGACTGCAATATTTCACTATAATTTCACTATTGCAGTGACTCTAGACAACATTGCCAACATGTTAAACGCTTTTGACCAGCACTGTTAATCATTGCCAACATCATTAGTATTCATCGTTTGCCCAGTTAGCATAGTTCGGGACGAAGAGGCCGTGGGTTCAAATCCCGCTACCCCGACCATTTAGAACAGGTTGGTGATTTGCACTTTTCAGAAGTGTGGATTGCCAGCCTGTTTTTCTATGCGCATCCTGTCACCCGTTTGTCACCTATTCATCCGTTCATATGCTGCCAGGTCGATTCCCATCCCCGAATAAGTGGCGTGAATCGCCGTAGTTTCAAGATTTGCATGTCCAGGCCAATATCGGACGGTATTTACCGG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCACATGCGCACGGAAGCTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //