Array 1 55457-56008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHN01000036.1 Clostridioides difficile strain CD10-165 KW95_Contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55457 29 100.0 36 ............................. GATTAACAAGGTCAGTAACATCTTCAGCGACAGGAA 55522 29 100.0 36 ............................. CTAATATAAGGCATTTTTAAAATTTTTATTATGCGT 55587 29 100.0 37 ............................. ACTTTAGTTTCAATTGCTAACGTGCTAGGTGTTTCAA 55653 29 100.0 35 ............................. TATCAAAATAACCCTAGACGCAATGATGAAGCAAT 55717 29 100.0 38 ............................. TATCCCACGAATGTTGTATCTGATACTCCTTATATTTC 55784 29 96.6 36 G............................ AAGGTTTAAAATCAATACCAACTATAGGAATATCGG 55849 29 96.6 36 G............................ TGTTTTATTTGTTAATTACATTATAACATCTAGACG 55914 29 96.6 37 G............................ TCGTTTATTTTAGCTCCTAGATTATTAAAAAATTCTT 55980 28 89.7 0 G...................-..T..... | A [56005] ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.7 36 ATTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTAATTCATTTTTTAATATTCCTTGTAATTTTAATTTGCTTTGTTTTAGCTTTTTTCTTTTAATAAACTTATTAGTTCTTCAGGTGCTGATAATGTTCTCTTTGATTTTGATGTTTTATTATATCTCTTCTGTTTTTAATTTTTTTCTTATGAAGGCTGACTTAGTATCCATAAGAGCACCATCCTTTGAGTTAGTTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAAATGTTTATTTTTATTAAATTATAAATTGGTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTGTTTAAGTATAGTTTAACAGTTGAAACATAAGGCATTGAGAGTGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATATGTAAGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTCAAATTAAAAGGATGTAATAATATTATAAAAAACAATATATAGGAAAAACATGTAAATACATATGTTATAATATTTTTAGCAAGAAGATGGAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCCCAACATTGATAAGGGAGGTGAATATAGTAAGTACTTACTCAAAAGGTAGGTATTTTTTTATACAAAAAATAAAAGTAAGTGATAATTTGGGAATAGACATACACCTAAAAAATGGAAAAGAAAAAATATATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAAAAAATAAGGGGAGAAGATAAGAGAAGTCTCATTCAAGACACTCTTACTTAACTTATATGATGCTTCTTATTGCAGATATAGTGAGTTAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10033-7972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHN01000042.1 Clostridioides difficile strain CD10-165 KW95_Contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 10032 29 100.0 37 ............................. TATTAAGGGGTAGTTTGATACTGTAAATTTAAGACTT 9966 29 100.0 35 ............................. CCAGTATTACTCCAAACCTCAAAAGAAGCATTTTC 9902 29 100.0 36 ............................. GAGCTTATTTCTGTTATTGCAACTACTTTAGTTTGT 9837 29 100.0 35 ............................. AACACTATATTAAACATTATCATAGCTATATTAGG 9773 29 100.0 37 ............................. TACAAATATATCTTTTTAGACTTTATTGCATATAAGA 9707 29 100.0 37 ............................. ACATATTTATTAAATGATGAAGAAGCAACAGGGGGTG 9641 29 100.0 34 ............................. GCTACAAAAGAAAATCTTAATGTAACATTAAAAA 9578 29 100.0 35 ............................. ACCACTAAACCTTTAAGCTCCTTTACATCAGCCTT 9514 29 100.0 37 ............................. GTTGTAGCAGTGGTAACTTTAATATGTGCAGCATTAC 9448 29 100.0 37 ............................. GCTACAAAAGAAAATCTTAATGTAACATTAAAAAATA 9382 29 100.0 37 ............................. ATAAGTATATACAAAACTGCATCAGATAAAATAACTC 9316 29 100.0 35 ............................. CCAGGAAATGGTGGTATTATAGGCCATTTAAATTC 9252 29 100.0 37 ............................. AAATATAAAGAAGTACCACTACCACTTACATTATCAG 9186 29 100.0 38 ............................. GAGTTTACATACGGCAAAGTGCCTCTTACAAAGTTAAA 9119 29 100.0 35 ............................. AACATAAACATAGTCCTAAATCTAAGCCTAAAACA 9055 29 100.0 37 ............................. ATAAATAATTCAGATATATTTGCATGGAATTATGAAA 8989 29 100.0 39 ............................. ATAAAAAGATAATAGATTATATAAAAGAAAAAGGCAAAG 8921 29 100.0 37 ............................. TAAGGAGGCAAGCATGCAAGATATAAAATTACACAAT 8855 29 100.0 37 ............................. GATATTAAGTCTAAGGCTCTTTCAAAGTAACTATCTA 8789 29 100.0 36 ............................. CCAGAATTAAACCAAGTAGCAGTATCAGAAGGATTA 8724 29 100.0 37 ............................. GTATATGATATTCTTCAAGAAGAACTTAACTTAACAG 8658 29 100.0 37 ............................. CTAATATAAGGCATTTTTAAAATTTTTATTATGCGTT 8592 29 100.0 37 ............................. TTTTATGAAAAAAGAAAAGACACTTTAAAAATTAAAA 8526 29 100.0 39 ............................. GTCTTTTTTGGTGTACGTCCACGCTTCCTAGCTTTACGA 8458 29 100.0 36 ............................. TTTGGATGGGAAATAAAATTATTATCAACAGGTGGT 8393 29 100.0 37 ............................. AACAAAAAATCTAACATAAAAACACCTACTAACTTTT 8327 29 100.0 37 ............................. GTATTAGTGATTTCCTTTTTTACAAAATTATTTTTTA 8261 29 100.0 37 ............................. GTAGTATCAGAAGAATCTAAATAAGGTAATCCACCCG 8195 29 100.0 36 ............................. ATTTTTATTGCAGTTTATAATTGGTATGGTGTTAAT 8130 29 96.6 36 ............................T GCACATGCTTTAGATGCTATTTCTCCAACTTTTTTG 8065 29 86.2 37 ................AG..A.......T TTTGGTGGTATTACAATAGTTCCGTCTGGTTTTACTT 7999 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ======================================= ================== 32 29 99.1 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CAAGGTGAGAAGAAGAATTATCATGTGGTATACAAAATTGAGTAAATTCTATTGTATTAAATAATTTAGTTTATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAATGTAGGAAATCAGAAGAGAAAGAGAATAAATAACATAGATAAAGCACTTGGATATTCTATTGTTTCAAGTGCTTTATGTGGTAAAAAATGGTATAATAGAGGTAAGAGTTTTGCAGTGAGCGATTTTTCTACTCAAGTAGGCTTTAACAGTTGCAATGTAAGGCATTGAGAGTGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATGTGCAAGTATTGTAAATACTCAATTTATTTTGGG # Right flank : TTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAATAATTATGTGCTATAATAGTTGTAAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTGATTGGCGTATTAGCTAGCTTAACAGCTACTCTAATAGCTTACGTAATTGGTAAATTAATCAAAAAAGTAAAAAGCCACTCTGTGCAAGAGAGTGACTTAGACGTTGAGCTTAACTTTTCGTTTAAGTTCAAAAAGAAACACTAATTTACGAACTTCACTCTAATGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTACCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACAAAATAATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 12713-11767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHN01000042.1 Clostridioides difficile strain CD10-165 KW95_Contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 12712 29 100.0 35 ............................. TCACACTAAAAGTCTTAAAACTGTAGGTTTAAACT 12648 29 100.0 37 ............................. TGGCATACAATACTTACTTTTATGCCTTTTTTACTGA 12582 29 100.0 36 ............................. ATCATACTTTTAGCATAGAAATATAGTGTTAATCAT 12517 29 100.0 37 ............................. GTCAAAGATAAAAAAACTCAAGAACTTAAAAATTCAG 12451 29 100.0 38 ............................. AAAGATATAATTTAACTTTATCATCATTATATATCTTT 12384 29 100.0 37 ............................. TGGATTGGTTTAGAAAAACTGTGGCTAATGATTATCA 12318 29 100.0 36 ............................. TTTTTTGAGGATGAAAAAGAGGAAACAAGAACAGCA 12253 29 96.6 37 ...............A............. GTTTTTATTGAAGTTTTTACTGTATTAGAATAAGCTA 12187 29 100.0 36 ............................. AAAAATACAATAAAAATATCTATAAATATGTTATTA 12122 29 100.0 36 ............................. AGTACTACATTTTTTATAACTTCCCAAACATTATTA 12057 29 96.6 36 ...............A............. ATAGAAGATGCTGCAATTCCTGTATTTTTAGATAAC 11992 29 93.1 37 A..............A............. GTCGCAACAAAAGCATGATAAGATTTGTTTCCACCAA 11926 29 79.3 37 A..............AA...C......GT CAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 11860 29 96.6 37 .............A............... TTTATAAATTTATCTATAAAGGTTCGAAATACCTTAC 11794 28 86.2 0 ....................-..TC...A | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 96.6 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : GAATTATCATGTAGTGTACAAGATTGAGTAAATTCTATTGTATTAAAAATAATTTAGTTTAGTTTTGAGGGGGATTAATACAATGCGTGAGAATTTACTTAAGGAGTACAATTTAAAAACTGATGAAGATGTAGAGTATTTTGTGAAATTTGCTACATTATTATATAAATTAAAACAGAATGATGAAGAAAAATTTCAAGAATATGCAGAGATATTGAGAGGTATTCTTAGAGAACAAGAAGAGAGAGAAAAGAAGTAAATAGAATAGATAAAGCACTTGAATATTCTGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAAATAAGAGTTTTGCAGTGAGCGATTTTTATATTTAAGTATAGTTTAACAGTTGAGATACAAGGTATTGAGAGTATACGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGTAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAAGAAAAGGAAGCACTTACAAATATGTAGGTGCTTTTGTTTTGCTCAAGTTTGGTCGGTTGAGTAAAATAATTAGAAAAAATTAGTAAAAACTCTTGATTTATCGTACGTACTATAATATGATTTAAGTACGGACAATAAAAAGAGAGGTGATTAGATGTCCAGTAAATTAGGCAGACCACCAAAAAAAGACTCTAAAAAACTGAGATTTGAAGTTAGACTTAATCAAGAACAAGCTGATATATTAAATGAGTGTGCTGAAAATCTTAAAATATCTAAAACAGATGTTGTAATTAGAGGAATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGATTTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 14999-14514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHN01000042.1 Clostridioides difficile strain CD10-165 KW95_Contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 14998 29 89.7 37 .GA............A............. CTTATTAAATGATGTGCAGTTTGGCTTACATTTCCAA 14932 29 93.1 36 ...............A....C........ TTGAAAGATAAAGGAATAAAAACTACTACTATAAAG 14867 29 100.0 37 ............................. ATTTTAGGCATATCTTTTGTTAGTTGCTCAACAAAAC 14801 29 100.0 36 ............................. GACAATATTATTGCCATATTATCATTTAATCCTCGT 14736 29 100.0 36 ............................. GTGAAGTCCTGTGGTGCAATAATATAACCATGCAAT 14671 29 100.0 36 ............................. CATGAATATACAGATTTGCCAGACTACGAGAGAGCA 14606 29 93.1 37 G..............A............. AATGAATCAATTGGCATAAAATGTATATATTTATTCC 14540 27 82.8 0 G...................-.-.A...A | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 94.8 37 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGTGAGAAAGAAATAGCATATAATAATAAGTCTGTTGTTGGAAGAGCAGCTATAGGAACTTTATTTGGCCCTATGGGAACAATTGTTGGTGGGTTGTCAGGAACTGGAAATAAAAAAAGTAAAACTGAAAAGTTGTTTATAAGTATTGAATATTTTTCTCATGGAGAATTAAGGGAAATAATAGCTGAAGATTCAATACTTAATTTTCATAGCCAAGAATTTATTGACAATATAAGGAGAAAAATAAATATAAGTAAGAATAATTTAGAAAATAATAAAGAAAAACAAATAAAATCAAATGATGATGCAATACAACAAGTAAAAGGATTAAAAGAGTTATTAGACATGGGAGCAATAACAGAAGAAGAATTTAGTAAGAAGAAAAAAGAATTATTGAATTTATAACAAGAGAAAATAAATAAGTATGAACATACAAAGCACTTGAATATTATGTTGTTTCAAGTGCTTTGTATGTTAAAAAGTGGTATAATGGAAATAGA # Right flank : CTAAATAGAAAAAGAAAGCACTTACTTTTATGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCGATAATTATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAACGGAAACTGCTATGAATAAAAGAATTACAGTTAGATTGGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATGGTATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCTCCCCGACCAAAGATTGAGTAACCCCTATTGATGTATACTACAAATATACTAATGTTAGTATACATCATTCCTTAAAAAAATTCAAATTTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAAG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 106075-104805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHN01000047.1 Clostridioides difficile strain CD10-165 KW95_Contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 106074 29 100.0 37 ............................. CCTAAATAAAAAAAATTCGTCTGCATGTAAAAATAGC 106008 29 100.0 36 ............................. ACTAAACACTGGAATTAAATTTCCAAAGCATATAGT 105943 29 100.0 36 ............................. ATACCAATATCTTTACATGTATTAGTTAGTGTATTG 105878 29 100.0 36 ............................. ATATTTATATTATATCACATTATATTATAAATTATA 105813 29 100.0 37 ............................. CAGGATACGGAGTACTAGGCTTAATAGCTTTTATAAG 105747 29 100.0 37 ............................. TAAAATTTGTTAAACCAAAAAACATCAATTTGATTAA 105681 29 100.0 34 ............................. GGAAGCGAAGATATTGCACTAGGCTCTATTTCTT 105618 29 100.0 36 ............................. GTTGACGAAAAAGGCAATTTACTATTTACATCTATT 105553 29 100.0 37 ............................. CTAAAAAAATGTTGAATTTTTAGTGGAGTTATGTTAG 105487 29 100.0 36 ............................. AAAGTTTCTGAAGGTGATTTAGTTGAAGAGGGAGAG 105422 29 100.0 36 ............................. TTGCCCTACTTCGTCTACTGCTCCAGATTCAAGTTC 105357 29 100.0 36 ............................. TAGAAAAACTCTTTAGAGCATGTGAGAGCGAAAATC 105292 29 100.0 37 ............................. GAATACGAAGTATTCAAATTTAGTAATAATGGAAATT 105226 29 100.0 37 ............................. GCGAACATAATGAGTTGGAAATATGAAAAAGAAAAAT 105160 29 100.0 37 ............................. GTAAATTATATACTACAATTATAGCACGATAATTTAC 105094 29 93.1 37 .............C.....A......... AAAAAATCACACCTTTTTACGAATTTTTTTTGAAAAC 105028 29 100.0 36 ............................. GGACTAGAATATCCCGAGTTGAAAGAGTTTGTAAAA 104963 29 100.0 36 ............................. TAAGGAGGCAAGCATGCAAGATATAAAATTACACAA 104898 29 100.0 36 ............................. TTCAGCTTCTCATGAGTGTAATCATATCCAAATAAC 104833 29 82.8 0 ................A.CA...C....T | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 98.8 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAGGGTTAGAAAAACACTTAAAAAATATCTAACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGCGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTGTGCTAAAATAAGGCTTAACAGTTGGAATATAAGAGATTGAAGGGTACTGATAATTGTTATTAATTGCACTATTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATGATTGCGTGAGTGTAGCATTTTCAGGCTATTCAATTGCATCTATTCTGGG # Right flank : GAAGTAAACTTATACTATAAATAAAAATCAACATAAAAATGGGGTGAAATAAAATTTATGATAAGAAAATCAAATGATAAAGATATAAATAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATAACTTTATAAATAAAGAATACTGGGAAAATAACTATAACACTGTCAAAAATGAATATATACCTATATCAGATACATTTGTATATGAGGATGGTCAAGAAATAAAAGGATTTATAAGCATAATAAATAAAAGCTTCATAGGAGCCTTATTTATAAATTCAAACTATCAAAACCTAGGTATAGGAAGTAAACTTTTAGACTATGCAACTAAAGAATACAAGAATCTAAGTCTAGCAGTATACAAAGACAATAAAAAGGCAGTTGTATTTTACAATAAAAAAGGATTTAATATAGTAAAAGAGCAAATAAATGAAGATTCAGGATTTAAAGAGTACATCATGGAATATAGTAAATAACATTAATATATTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 258726-256725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHN01000047.1 Clostridioides difficile strain CD10-165 KW95_Contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 258725 29 100.0 37 ............................. TTTTTTTTATTTTGCAATCATGTTTTTAGTCTGTAAA 258659 29 100.0 38 ............................. CCAAAATTGTTGTTGTATTTAATAAAAGTTCATATCCT 258592 29 100.0 37 ............................. TTTTTCAAACCTCCTTATCTATCTCTATCTTTAAATA 258526 29 100.0 37 ............................. TCCTGTAATAGCTTTTCAAAAACATAACTAAATCCTT 258460 29 100.0 37 ............................. GTTATTGCAAGTGCTACAAGTGTAATCGGATTTGCTG 258394 29 100.0 36 ............................. ATTACTTTAACAGATATGAACACAGGAGAGTCTAAG 258329 29 100.0 37 ............................. TATATAAATTTTCTTTTTCTTCTATTTCTAAGTTCAA 258263 29 100.0 38 ............................. CATTCTAAAATTAATGTCTCGTTTTCCAGTTGGAGCAA 258196 29 100.0 36 ............................. TGATTAGCCCCACCCGGATTAAAATTTTTTGACTCA 258131 29 100.0 36 ............................. AAAGTATGATAGCTGCATTATGCGATGGAGATATGT 258066 29 100.0 37 ............................. GGACAAACCCAACCATCATTATAATTAGTTACCAAAA 258000 29 100.0 32 ............................. AAACGATAGTCAAGAGCATCCTCGTTAGTATT 257939 29 86.2 36 AA.C..G...................... TCAGCTCTTCCTGCCTCTATGCTTGGATTGTAGCCA T [257930] 257873 29 100.0 38 ............................. TGTTTACGATGCTGAGTAAAAAATTCTATCCATTTAAT 257806 29 100.0 38 ............................. ACCTTCAAAAACTCCAACTCACTTACAGAAGGATAAAA 257739 29 100.0 37 ............................. TTATCAACTTCAAAATCGTCTAAGTCGTCATGTACTT 257673 29 100.0 37 ............................. AAATACGTAAAAAATTTAGTAATATCAGCAAAAGCAG 257607 29 100.0 36 ............................. GGACATTTTGCTTGAATTTGTGTTTTAAATTTAAGT 257542 29 100.0 35 ............................. CAACATGATAACTCAGATGTTACAGGGAAAACATC 257478 29 100.0 38 ............................. GGTACTAATCAAACTGGCTGGACTTTTAATGGTGGTGG 257411 29 100.0 37 ............................. CGGACTGTTGCAACACAAAGTAAAGCAGGTAGTGCAG 257345 29 100.0 37 ............................. AAATCATCTGAATACCCAATCAGCCTAGCGGTATTAC 257279 29 100.0 37 ............................. CTAGCAAAATTTGCTAAAAGGTACTATTATTGTAGTG 257213 29 100.0 37 ............................. GGGGTTAGTCCTAAACCATTTCTAGCACCCGCATACG 257147 29 100.0 37 ............................. ATCGGTATTGCGATTGGTGGTGGTTATTTAGTTTGGA 257081 29 100.0 36 ............................. TCAGGACGATTTCTTAGTTTATGTAAAGATTCTTTT 257016 29 100.0 36 ............................. TCACGTCTTTTTCTTGTAAATAGCAGTCTTAAATCG 256951 29 100.0 37 ............................. ATGCCTACATATTGTTTGAACGAAAAAAAATATTGTG 256885 29 100.0 37 ............................. TTTCTTGTAACCATTATTGTTATATCATCTTTAGTTA 256819 29 100.0 37 ............................. ATAATTCTTCCTGAGATATTTAGTTTTTCACCCAATT 256753 29 96.6 0 .......................G..... | ========== ====== ====== ====== ============================= ====================================== ================== 31 29 99.4 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : GGAGTCTGGAATAAATCTGCTAATAATGATATGTTAAATAATGATACTGTTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTACAAGTTGTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAACATGTTTTATGAATGTGGAGATATAGTTGTTACAAGTTATAGTTATAATGATAAACTAGGTCTAATATTTGATTGTTAAGAGAATTATAGTATAACTAATTAAAATATTTTATTGAGAATTTGTTATAATTTATATCGATTACAAGTTTTATATGTTATAGTAGAATAATTTTGCAGTGAGCGAAAAATATGTGTAAATGGCTGTGAGCTAGTGATGGCAGGCTTTATAACTGAATTTTTGTTTTTAGCTAAAAACACTACTGGTGGCTCACTGCAAATTACCTATTATAATAACACTACAAGTGTTGGAATCACTATAGTTTTATTTGG # Right flank : TCACTTATTCATTAAGAAACTTAACTGAGAGTTTGATTTATATTATTGAATTAGCAAGAGTTTTAGAAAGTAGAAAATTGTACCCCAATAATACCCCAATCACAAAAATAAAAAATAAAAAACAATCAAAAAGATTGCTCTAACATCATAACTAAATAGCTATATACCTACACTTACAAAAACCAACAAAATAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTAAAATCCAAGAAAAATATTAGCACTTTGCTAATATTTTTTTTGTGAAAACTAATCATAACCTATATAATTAACTTATAAAACACACACAAAGAGGTAAAACTATATGGCTAAAATTGATAATATGATGTCCATATTATGGATGCTAAACTCAGATAAAAAAATAACCGCAAAACAAATATCTGAAAAACTAGAAATAAACATAAGAACTGTTTACAGACACATTGATGCATTATCTGCTAGTGGAATACCTATAATTTCAGATACAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //