Array 1 163254-158597 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSXP01000003.1 Streptococcus suis strain WUSS425 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 163253 36 100.0 30 .................................... ATAGCCACTTGTTGACAATGATGGTTTTTT 163187 36 100.0 30 .................................... GTTCCAATCCACCACCTTGCATAGTTCGGA 163121 36 100.0 30 .................................... TCCACGTGCCAGACTTCCGTATCTTATTTT 163055 36 100.0 30 .................................... CGATGAATGGAAAGGCCTATCAATTCAGCC 162989 36 100.0 30 .................................... AATTTTCCCAGTATTCAACGCGATGAAGCG 162923 36 100.0 30 .................................... CATTTCAAAGGCACTTGTTACCCTTGCACA 162857 36 100.0 30 .................................... AAAATATGCAAGTAAGCAATTGAAGAAATT 162791 36 100.0 30 .................................... TTAGTTCTTCATGATTTCTTGCGTCAGTCA 162725 36 100.0 30 .................................... TACATGAGTAGTACCTCCTTTACTCTGAGA 162659 36 100.0 30 .................................... AGAGAACTTCAAATATCTGACAGGAACCAA 162593 36 100.0 30 .................................... AGACCGTGCTGCAAGATAGCCAAAACCACC 162527 36 100.0 31 .................................... TCAACTTCATTATCCAGATAACGCTTGTTGC 162460 36 100.0 30 .................................... ACAGTGAAGTTGAAATTGACGTTATGGTTA 162394 36 100.0 30 .................................... ATGTGATATCATTAAATTGTCCTAAAGGAT 162328 36 100.0 30 .................................... TTAGTTAATGGGGTTTTGATTACGTCGTTT 162262 36 100.0 31 .................................... TTTCAAAACTGGTGTTACACCAAAAAAAGTT 162195 36 100.0 30 .................................... CTACTTCAACGTATCGACAGATTATCTACT 162129 36 100.0 30 .................................... AAGACCTGATGGAAATGTTGAATGCGAGTA 162063 36 100.0 30 .................................... AAAACCTTCAGGTTTAACCATTTCCACAGT 161997 36 100.0 30 .................................... CAGCGATTTTGTAGAAAGGGGGTTAGTTTT 161931 36 100.0 30 .................................... CACTTGCTGTCCAGTATGGAATGGTGCGTC 161865 36 100.0 30 .................................... TATTGGTATTGCCTATAATTGGAGTAAGTA 161799 36 100.0 30 .................................... TTGGTTCAAGTGTGGTTGATATTGAAGGTG 161733 36 100.0 30 .................................... GACAACAAAAGGTAGCCTGGTAGAAATAGT 161667 36 100.0 30 .................................... TCATTGAATTTCTCATCCTCTGCTCTGTTT 161601 36 100.0 30 .................................... TCTGGATCAGCCAGAACTTCATCAAGCGAC 161535 36 100.0 30 .................................... TGTTCATATGTTAGTCCTTTCTTAGACAAT 161469 36 100.0 30 .................................... TGGGCAGAATTGGAGCGAGCATGGGGATAT 161403 36 100.0 30 .................................... TGGGCAGAATTGGAGCGAGCATGGGGATAT 161337 36 100.0 30 .................................... GCTACGAGGTCGAGAAGGAGCGGTTGTATA 161271 36 100.0 30 .................................... GCAAGAAAAGACCTCACTCAGAAAGAAGCT 161205 36 100.0 30 .................................... ACCACAGCTAGCCAAATTGTTAGAAGATAT 161139 36 100.0 30 .................................... CAAAGATAATCCGGTCATCTTCCACTTTCT 161073 36 100.0 30 .................................... TATAATTAAGCCAATACTGTAATGTGTTCC 161007 36 100.0 30 .................................... GTTAGTTCGTCAATTGTCAAGCGTAGTGCT 160941 36 100.0 30 .................................... ATGCCCTTGAAGTTTTGCCTGAGTCTATCA 160875 36 100.0 30 .................................... AAACCAACCGCAGAAGATTTGTACGGTAGT 160809 36 100.0 30 .................................... TATTTTCCAATGAAGAAATTTACATTTCTA 160743 36 100.0 30 .................................... TCTTGCCCTGCAACGGGCTACAAGATGGTC 160677 36 100.0 30 .................................... AACCCATTCCACCTGAATTTACACCATAGT 160611 36 100.0 30 .................................... GCAGTCGACAAAGCCTTATAACATCCTGAA 160545 36 100.0 30 .................................... TTAGGTATAATTAATTCAATAGGGTAGATA 160479 36 100.0 30 .................................... GGGGAGTAGTGGAAATCCAGTAGCGACTGT 160413 36 100.0 30 .................................... ACAGACGATTGACCAAAACTTAGCGCAGCT 160347 36 100.0 30 .................................... CTTGAGAGCCGATGACAGTTGCATTTAATT 160281 36 100.0 30 .................................... AAAGTTATAGAGCCTATTTCCAAGAAGTAA 160215 36 100.0 30 .................................... ACTACAACACCGCTAAAGATGGCCAGGCAA 160149 36 97.2 30 ..............................T..... CCTTGATATGACTGAGTTTAAGGGTGGACA 160083 36 100.0 30 .................................... TGGTGATGTCTGGCTTAACTTCCGCGACAA 160017 36 100.0 30 .................................... TTTTCGAGTAGAGCCAAACGGCTCTTTTTT 159951 36 100.0 30 .................................... GGGATTTCTTTGCATCGGCAATTGACTTGT 159885 36 100.0 30 .................................... TTGTCAACCAGTCACATTCATAGCGTTTAG 159819 36 100.0 30 .................................... TCTTGGTCTTTTGCTTCAATAGCGGTCAAG 159753 36 100.0 30 .................................... CTGTTCATCAGTCAGCGCTTCCATTTCATC 159687 36 100.0 30 .................................... TCGGGGCTAAAATTATCTCACGGCAGAAAG 159621 36 100.0 30 .................................... AACCAAACCAAATTTTAGTACCTGTGCCTG 159555 36 100.0 30 .................................... AGGCGGCAATGGCGAAATTGAAACTATGTA 159489 36 100.0 30 .................................... TTCTAACACGTTTCCTACTAGACACCAAAA 159423 36 100.0 30 .................................... ACAATTTTCTTTACAAACTCCATCAGTTAT 159357 36 100.0 30 .................................... GGATAAAAGTTGAAAATTTTAACACTGATA 159291 36 100.0 30 .................................... CGGTTATTTTGGATTGTGTATGACAATACT 159225 36 100.0 30 .................................... CCACGAATAGGTAAGATACGAACATCATCA 159159 36 100.0 30 .................................... GCCGTATCAACCAACCATTTAAGCTGGTCT 159093 36 100.0 30 .................................... CGATCCAATACCAGAATTTTTGAAAGGACG 159027 36 100.0 30 .................................... ATTGTTTAATCATTTGAAGGCTTGTCAGTT 158961 36 100.0 30 .................................... TCTGTAAACGGTTCTAGTGTCCGTGTCTTG 158895 36 100.0 30 .................................... ATTCAGCAGTTGTAACTTTCCTCTATGAAG 158829 36 100.0 30 .................................... TGAGTTAATGAATGAACTAAAAGAACTGCT 158763 36 100.0 29 .................................... CATTTGACTATACTCAAAGACGTCAATGT 158698 36 100.0 30 .................................... ATTATCAAATCGACAAACAACAGTATTGTT 158632 35 88.9 0 .........................A..A-.....G | T [158599] ========== ====== ====== ====== ==================================== =============================== ================== 71 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCATTAGGGGTCAAAATTGAAACTATCAGCGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAAGGAGGGGAGTAACTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATTGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAGTCTGCATTTATATCATTGTTTTAATTTTTTATAATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //