Array 1 85693-83955 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMIT01000002.1 Klebsiella pneumoniae strain RADAR38 NODE_2_length_537602_cov_66.964640, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 85692 28 96.4 33 ...........A................ CGGCAGGATCTGCACGCCATCCTTGCCGCCACC 85631 28 100.0 33 ............................ TAGTGGATGACACTCGCGATTTACCCGTCAGCC 85570 28 100.0 33 ............................ TAGGTGTCCAGGTCGTTCCCACGGCGGGTGTAT 85509 28 100.0 33 ............................ CGCAGTACGAAAAATAACGACACCAGGCGGCAT 85448 28 100.0 33 ............................ TAGTATGAATGACGATGCGTCATACAAGCACGT 85387 28 100.0 33 ............................ TACCCTCCGTTCCTGCCGCTTCCCCAGCGCGCC 85326 28 100.0 33 ............................ TGCCATCCATGGACAGCATCATTTCGGCTTTGG 85265 28 100.0 33 ............................ CCCGGTACCAAGTACTGATATTCGGGATACAGT 85204 28 100.0 34 ............................ CTGTACTCCGCGCCATCCTTTCTGCTTTTTAAGG 85142 28 100.0 33 ............................ TCGAGCTCGGTCATTTTCGCCACGGTAAACGCG 85081 28 100.0 33 ............................ CAGGTCAAACGATACCCCGTCAATAAACCGCGC 85020 28 100.0 34 ............................ TGACGGATCAGTAGTTACTGACGGATCGCCCCCA 84958 28 100.0 33 ............................ TTTTTTGATCCGGGCAAAAATCCAGGTCGCGCA 84897 28 100.0 33 ............................ TATTGCGTTTCCGCTTTCCCGCTGGAACTGCGC 84836 28 96.4 33 ..........T................. TAAAAAGGCTACTTCATTTGAAGAAACGTTTTC 84775 28 100.0 33 ............................ TTACTACAAGTCCGGCACGTTCCATCTGGAGGA 84714 28 100.0 33 ............................ CACTGGGGAAATCGACTATGCACGACAGATGCG 84653 28 100.0 33 ............................ CAAACGCAGCACACCACGGAGTTTCATCGTCTT 84592 28 100.0 33 ............................ TTCGAATCCACCCCAGGACATCATCACTCGAGA 84531 28 100.0 33 ............................ CTATCCTCTTGTCACCGTATAACCGGCCGCCTG 84470 28 100.0 33 ............................ TTGCGGGTGCAGCTCGATGCTGGAATAGATCTT 84409 28 100.0 33 ............................ CGGTTAAAAACGGGTGCTTGCTGTTTATCCTGC 84348 28 100.0 33 ............................ TCAACCGTGAAAAGGTTTCCGCTGTCCCTCGTC 84287 28 100.0 33 ............................ TTTCTCATGAACCCCCCAACCGGCTCGGTTGAC 84226 28 100.0 33 ............................ TAAAAAACTACGAAACTGGCCATACCGAGGTGG 84165 28 100.0 33 ............................ CGCGCTTTTGTTGTGAGAGACGCGACAGAACCC 84104 28 100.0 33 ............................ CGGTAGATGCCGGCACCACACTGGTGAGTCTGC 84043 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 83982 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.8 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95023-94446 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMIT01000002.1 Klebsiella pneumoniae strain RADAR38 NODE_2_length_537602_cov_66.964640, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95022 28 100.0 33 ............................ TGAGAGGCTTCATGATGCGGCGCCTCAGCTTGT 94961 28 100.0 33 ............................ TTGTTTTAATTCGCTGGTCGCTGCCGAGTTGCA 94900 28 100.0 33 ............................ CGCGATTACGGCATGACCCCTGGCTTTTTAGAT 94839 28 100.0 33 ............................ CGTATTTGTAAGCGTTGTCCAGGTCCTTCAGCG 94778 28 100.0 33 ............................ CAGACATACCCCGATCAATCAGTGGTATCAGGG 94717 28 100.0 33 ............................ CGCATAGTTACCCGAGATTTCTGCGGACGTGCA 94656 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 94595 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 94534 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 94473 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : AGGGGGTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTATCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGACATCTAAATCATTCGAGTTTATTACTCGTCTGGATATATTATTCTTCATATTAATTATCTATGGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGGTATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //