Array 1 5584-2361 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBS01000216.1 Streptomyces hydrogenans strain JCM 4771 sequence216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5583 29 100.0 32 ............................. CTGGATAAGGCGCTCAGCATCGGCAGCGCGAA 5522 29 100.0 32 ............................. ACCATGTCCGTCACCGTCACCAAGACCGGCGG 5461 29 100.0 32 ............................. ACGGTCCGGGCCCTGATGCTCCAGTGCGCCAT 5400 29 100.0 32 ............................. GCGGGCCAGCTGCCCGGGTCCTGGTGGTCGTC 5339 29 100.0 32 ............................. GTCATCAGCCTCCCCGAGATCGAGGACGCGAT 5278 29 96.6 32 .............A............... CTCGCACAGCGTCTGGCCAAGGAAGACGAGTA 5217 29 100.0 32 ............................. GTCATGATGGTCGCGGCCGGCGGCGTCGCCCT 5156 29 96.6 32 .............A............... CGGTGAGGCCGAGGAAGTGATCCCGGACTCCG 5095 29 96.6 32 .............A............... GCGCGCACTGTGCGTGCCCGTGGCAGACTCGC 5034 29 96.6 32 .............A............... TCGCCCAGTTCCTCGGAAAGCTCCTCGTCCGG 4973 29 100.0 32 ............................. AGGGCGGTCCCCTCGTGGGCGTCTACGGTTCG 4912 29 100.0 32 ............................. AACGGGGTGGACCCCGTCACGATCGCCCCGAC 4851 29 89.7 32 ...........G.A..............T ACCACGTCTACATGTACGACCTCGGCATCCGG 4790 29 96.6 32 .............A............... GAGCTGCTGGCCCACTCCGCCACCCCGGACCA 4729 29 96.6 32 .............A............... GCGTCGCCGCCCGTGGACGGCTCGGCGAAGGT 4668 29 96.6 32 .............A............... ACGTCGCGGACATCCTGCGGTGTGACGGTGGT 4607 29 96.6 32 .............A............... GTGACGACGGCGGCCTCCGCCTCGGCGACTGC 4546 29 96.6 32 .............A............... TCGAACCGGGTCACGACGTGGTCGTATCCGGG 4485 29 96.6 32 .............A............... ACGGAGACCCCGTACCAGTCGTGGCGGCCCCA 4424 29 96.6 32 .............A............... TCGAACCGGGTCACGACGTGGTCGTATCCGGG 4363 29 96.6 32 .............A............... GCGCAGGTCAGAAGCCTGCAAACTGAAAATCG 4302 29 100.0 32 ............................. CGGATCACGGCGGCAGTGAACTCGGCGTCGAT 4241 29 96.6 32 .............A............... GTGAACCTCTTCACGAAGCGGCCGGCGGGCCA 4180 29 96.6 32 .............A............... ACGAGCACCTCACGGGGGCCCATGGTGCCCGG 4119 29 96.6 32 .............A............... TCGAACCGGTCCACACGAAGGGCCGGTCCATC 4058 29 100.0 32 ............................. TTTCCGGCGCCGAGCTGGATCGTCTCGACGTC 3997 29 100.0 32 ............................. CCCGAGCAGCCGATCCCGGACCCGGGTGAGCA 3936 29 100.0 32 ............................. AACGCCAAGACCCAGCTCGGCAGCGGCGAGAC 3875 29 100.0 32 ............................. CAGGTCAAGGCGCTCAAGACCACCGAGACGTC 3814 29 100.0 32 ............................. GGGCCGGCCGCACCGGACTGGGCCCCCGCCTG 3753 29 100.0 32 ............................. GGCGCCGCTGCGCCGGGCGCGGCGCCCGCGAC 3692 29 93.1 32 ...........G.............T... CAGCTTGTGCTCGCGGAGATGGGCTCGGCGTC 3631 29 89.7 32 ...........G..........C..T... AAGGACTGGGGACTCAAGCCTGGCGAGGAGGG 3570 29 96.6 32 ...........G................. GGCACCTGCCGATCGTGCTCCTCGCCCAGCTC 3509 29 96.6 32 ...........G................. ACCAGGGCCCGGTTCCAGCCCGCGTTCCCCTC 3448 29 93.1 32 ...........C.G............... ACCGCGCGGAAGGCGGCGAGGGCCTCGGACTG 3387 29 86.2 0 ...........TTG..............T - Deletion [3359] 3358 27 86.2 32 --.........C.G............... AAGGCCAAGGGCCGCGAACACCCGTCGATCAC 3299 29 89.7 33 ...........C.G...........C... CGCGACGCCGAGGACGCCACCCCAGTGCAGGAA 3237 29 89.7 26 ...........C.G...........C... CAGGACGAGGCGCGCCTCCCCGGCCA 3182 29 86.2 32 ...........CTG...........T... CTGATCCTGCGGACGCGGAAGCTGTTCCTGTA 3121 29 93.1 32 ...........C.G............... GGCTTCAGCTTCGCCAACTTCTGCTGCAGCCA 3060 29 96.6 32 ............................T CCTGCGATGCCGGCGCTGGTGCCGAGGCAGAT 2999 29 100.0 32 ............................. CCCGAGCTCGGCACGTTCCTCGCGCTCCAGGC 2938 29 96.6 32 .............A............... GCGTTGTACGGCGCGGGTGTGGCTGCCGCGGA 2877 29 93.1 32 ...........C.G............... AGAGCGACAAGGGCTTTTGTTTCGCCCGGCGT 2816 29 93.1 32 ..........T..A............... CACACACGGGAGCCCCACCGTGCCACCTTCCA 2755 29 96.6 32 .............A............... TCGAAGGGCATGAGCGGCAGCTCTCCGCCGCC 2694 29 100.0 32 ............................. GGCTCCGTCATCTTCAACGCCGACCCCGAGGG 2633 29 93.1 32 ...........C.G............... GGCCTCCCCATCGAAGGCGTCAGCACCCCGTC 2572 29 89.7 32 ...........T.G...........C... GAGGTGCCCGTATCGGTCCGGGATGCCGTCAA 2511 28 82.8 32 ........-..T.GTA............. GCCAGGTACAGGCCCAGGCCCGAGCAGATCGT 2451 29 82.8 32 ...........G......A.....ATT.. TCGGTGACCGAGGCGTACCCGATGCTGTGCGC 2390 29 72.4 0 .........A...GG......G...GGGA | T [2366] ========== ====== ====== ====== ============================= ================================= ================== 54 29 95.1 31 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : CTGACGTCATGTCACCGTCAGGCTGGACACGGCTCACCGAAGCGCGCGGAACGCGGCGCCGATTGGCCATCGTGGGCGGTCACGTCATCAGGCGCCCCTTCCTGATCCTCGCCCTGGCGGGCCTGGCGTTCCTCATCACCCGATACGGCAAGGACTTCCCCGTGCTCTACGGAACGGCCCCTCTTGGGGCCGTCCTGATCCTCGGGAGCATGGGCCGCTACCGCCCGGCCAGTCCTGCCGAAGACAGCGACGCTGAACCCTTGCCGCAGGACCCCAAGGCGAACTGACCACCGACTGGCGCCGCGGCTGAGAGGCCGCTGAGAACCGTCCCTCACCGACAGACAGCCGCTGGCAGAGCGGTCTGGTTGCTCACGCGATCGGGGGACTGGGGCCACTCCAAACCGTTCCTCTTCGACACCGCCCTGACCCGTCACCCACACGGCCCAAAAGTGGGGCCAGCCAAAACCGTTCTAGTGGGGCCAAAACACACCGACGGAGAC # Right flank : GTGGGTGATACGTTTTCCGCACAGAGCTGGGTTCTGTCCCAGGGGGCGCCGCTCTTGTGGTGTCTGCGGGGGTCCTGGCGGCGCGGGAGCCAGGTGCGGTCTGGTCTGGGTGGCCCTGTGGTGAGTGTAGGGGTTCTGGGTGCCTCTCAGGCTGTTTTCCCTGCTGGTGGGGTGTGCTGAGAGCTGCGAGTGGGGGACGGGTGTGGTTTTCGCACGGCACCGGGTCGGGCTGACCGGGGCCCTCGTCCGGCCGGGTTTCGTGCGGCGGGCAGGCTTCCATCGACCTCGTGCCACACTTCCCGCGGCTGCTCCCGGGACCGGCCGGCTCGAACCCCGACCACCTGTTCCCCGTTCGCGGGGGATGACCTCTCGCGGTATGTGAAGGATTCGCCGACCTGCCGCTGCTCCCCTTCCCCCGCCGGGGACGGCCCCGGAGGACTGGGAACGGGGCCGTTCCCTGTGCTCTGTGGGGACGGCCCTCAGTGTGGCCCCCGGGGTTG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : CTGCTCCCCGCACACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23659-24453 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBS01000061.1 Streptomyces hydrogenans strain JCM 4771 sequence061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 23659 29 100.0 32 ............................. AAGGCCGCCGCCGCCCGCGAGATCGGGATCAC 23720 29 100.0 32 ............................. CACATGCTCAAGCAGTGGTCCCGCGAGTTCCG 23781 29 100.0 32 ............................. GGCGAGTTCACCCCTCGCCCCTGACCCGCGAG 23842 29 100.0 32 ............................. GCCACCGACGCGTAGGCGGCACCCGCAGGCGC 23903 29 100.0 32 ............................. GGCAGTAAGTCCGGCATCGTCATGAAGGAGGG 23964 29 100.0 32 ............................. GCGATCAACCCCAAGGACTGGCTCGACCCGGC 24025 29 89.7 32 ........T.....T........A..... AACGGCATCCGCAAGGTCTGGAACTTGGTCAC 24086 29 86.2 32 ..........TA....T.....G...... AACAGCGACGAAGTGCCGGCCTACCGGCACAC 24147 29 89.7 32 ...........T.............G..G TGCACCCGACCGCCGCCCCGGCCCTCGGTGAA 24208 29 96.6 65 .............C............... ACCATGCGGACCACCGCCCGCATACAGGCCGTCTGCTCCCCGCACCCGCAGGGACAGCGGGACTC 24302 29 86.2 32 .......T...T.C..T............ GGCCTCGCCACCGTGCCCGCCGGCGACCTGTG 24363 28 86.2 33 ..........TG.C...........-... TGGCGGATCCGGCGTGTACGCCGCCGGGAACGG 24424 29 72.4 0 T.....T.T..T..T...T......TT.. | G [24428] ========== ====== ====== ====== ============================= ================================================================= ================== 13 29 92.8 35 CTGCTCCCCGCCCGCGCGGGGATGGACCC # Left flank : CGGGTTCCTCCTCGGCGCGGGGATGGACCCGGGACCTCCCTGGACCAGCTCCGTCAGGAGGTCTGCTCCCTGCTCGCGCGGGGATGGTCCCGGCCTAGCGGAAGAGCGGGACCGACTGGCCAGCTGCTCCCCGCGCCCGCGGGGATGGTCCCGGCCGTGAGCTCACCTCGCTCCACCGCACCAACTGCTCCCCGCGCCCGCGGGGATCGGGCCCTTCTTCTCACAGCCGCATCGCGGCCGCGGCGACTTGCTTTCTGCGCCGTGGAGATGGCCCGTTGCGGTCGGTGAGTGTGGGAGAGGTCGTTGTGGTTGCTCGCCACCGAGCTGATCCTGCTCCTGTGCTCACCACTGAGGTCACCATGCCCGGGGTTACTCACCAAGGGGCTCACCACCGAACTCACCACGGGTGGTTCTCTGGACCCCCGGGGAGTGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGAAGCGGGCCGGTGTCGGGTAGAACTGCAGGTCAGGAAGA # Right flank : CGACGGGGCGGAGGCTGGGTGGCAGGGGTGTGTGAGTGTTTGGGATCCGGCTGGCTGTTGGGGTGGCGCGGGGTGTGGTCGGTTTCTTTGTCCTGGGCTCTCCCTTCCGTACTATGTACTGGGTGAACACTGATTTTGACTCTTACTCGCTCCGTGCTGGTCCGCCGCCCGTGGAGGTCTACCTCCGGTTGCGGGTGACCTCGGGGTTGAGCGCGAAGACTGTGGAGGCCGCCGAGGCGGGCCTGCCGAACACCTGGCACGGCGTAACGGTGCTGTGTGGGGATGAGCCGGTCGGGATGGGTCGTGTGATCGGAGACGGTGGTTGCTTCTTCCAGATCGTTGACATCTGTGTCGCGCCTCAGCACCAGGGGCGCGGCCTGGGGAAGAAGATCATGGCGGAGTTGATGTGTGAGCTGGAGCGGAGGGCGCCGGACGGTGCGTATGTCTCGCTGATCGCTGACGGCGATGCCCGGTTCCTGTATGAAAAGTTCGGATTCCGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25118-28668 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBS01000061.1 Streptomyces hydrogenans strain JCM 4771 sequence061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 25118 29 75.9 32 ...T......TT.GT....T.....T... ATGCGCGCCCGCTACGCGGGTGGCGGGATGAA 25179 29 96.6 32 ...........C................. AGGAACGCCCCGAAGGCGGGGTGGACGCCGAT T [25194] 25241 29 86.2 32 ..........TG..T..........C... CAGAAGGGACGCCCGAGCTCGTCGATCCTGTC 25302 29 72.4 32 ..T...G.T..GT.T.T........C... CTGCAGTACGTCACGGACGACCTGCCCGGCTG 25363 29 86.2 32 ...T......TG..T.............. GGCATGGGCTACAAGGGAATCGTTCAGTTCGG 25424 29 82.8 68 ......TT...G............AT... TCCAGGTCGTGCAGAACGACGTCGTCCCACCCCTGCTCCCCGCCGGCGAGCAACTTGCTGCCGACTTC 25521 29 100.0 32 ............................. GGAGTCTTGGCGCGCGGCGAGTCGACGGAGAC 25582 29 100.0 32 ............................. AGGGCGGTGACGGTGGCACGCACGGAGACGAT 25643 29 96.6 32 ...G......................... GGCACCGGGGCGTCACAGTTGACCAAGCCCGT 25704 29 96.6 31 ..........T.................. CCCTGGCCGATGCAGTGCTCCGCAGCAAGCG 25764 29 100.0 32 ............................. GTCAGTTCCTCCTGACCCTCGACGGCAGCGAA 25825 29 100.0 32 ............................. CTGGCCGCCGCCGAGGCGGAGGCCGCAGTCAA 25886 29 100.0 32 ............................. AAGAACTCGCGCCGCTAGTTCTCCCTCTCGCC 25947 29 100.0 32 ............................. ATGCTCCCCGGGTGCCTGTCGACGTGCTGCAT 26008 29 100.0 32 ............................. CCATGCTCGGAGCTTCTGGCACCGCCGGTTCG 26069 29 100.0 32 ............................. GTCCGCGACGGCGAACTGATCACTACGAAGGC 26130 29 96.6 30 .........................C... GCGCGCCCTCGAATGGGCGTCGAAGGGACG 26189 28 89.7 32 ..............T.T......-..... AGGAACGCCCCGAAGGCGGGGTGGACGCCGAT 26249 29 82.8 32 ...T......TG..T..........T... CAGAAAGGACGCCCGAGTTCGTGGATCCCGTC 26310 29 72.4 32 T.T.....T..GT.T.T........C... CTGCAGTACGTCATGGACGCTCTGCCCGGCAG 26371 29 86.2 32 ...T.......G.AT.............. GCTGCCGGATCGAAACCGGCCCGGGGCACTCC 26432 28 86.2 32 .........A.G....G......-..... CGGCTCACCTGGTGCCTGTACCGGGTTTCCGC 26492 29 89.7 32 ...........C.A...........C... ACCGTGTCGCAGACCCACGCATGGGCTCACAC 26553 29 86.2 32 ...T..T....T.G............... GACGCGACGGCCCCCATCCAGCTGGAGGTCGT 26614 29 93.1 33 ..........TG................. TCCGTTCCTAGGTGGGGGGGGGTGTGGCCGATG 26676 29 86.2 32 ...T......TG...............T. GGGCGCGGCCCCGGATCAGGTGCTCGAACACC 26737 29 82.8 32 ..........TCTG...........C... GTGGCGCAGATGCGCAGTCTCATGGAGCGCTA G [26754] 26799 28 79.3 32 ..-..T.A...T....G........C... AAGGTCGGCTGGCGGGTCTACAACGCCTGGCC T [26815] 26860 29 86.2 32 ...........G.T...A.......C... GGGGACGCCGCCCCGCACACCGTCCCCGTCGC 26921 27 86.2 33 ...........C.G...-.....-..... CCGCGACCCCCACGCGTGGGCACTGCTCGGCAA 26981 27 89.7 32 ...........-.G.........-..... CAGGCTTCGGCATGGGTGCTGGTGGCCACCAG 27040 29 79.3 32 .....TT....T.G........C..C... GTGCCGATTGTGTCCCTTGAGCCGACGTCCGG 27101 29 82.8 32 .....TA....C.G.....C......... GCGACGCCAGCGAGAGCGCGCGCCACCCCGTA 27162 29 96.6 33 ...........G................. GCTCACGCGCTCGTGGCCTTCATCCGGGGCACG 27224 29 89.7 32 .....T..T................C... TGCCACCCAGACAACGCGCACGACTACAACCA 27285 29 89.7 32 ...........GG............C... CCGCAACTCTGGTACCTCGGCAGTGCCGGGAT 27346 29 86.2 32 ...........T.G.......C....T.. GCCTTCTTGCGGCGGGCCTGGACGGCGGAATC 27407 29 72.4 32 ...T.T....TG..T.......C.AT... AAGCGCAAGGGTGCCGACTGGGAGATCGGCTT T [27427] 27469 29 96.6 32 ...........C................. CAGGACAGGGGGCCCTCGTCCGTCGCCGCCTC 27530 28 82.8 31 .....T....TG....-T........... TGCGCCGCCGGTAGTCCCTCGCCCTCGGCGT T [27557] 27590 29 93.1 32 ..........T..A............... TGGCCCCATGACCTGGGCACCGCCATCCAGGA 27651 29 89.7 32 ...........C.G..............T CGAACACACGGATCGAATTGCCCCGTGGTCAG 27712 29 89.7 32 ...........C.G...........C... CGCGACCCCCACGCGTGGGCACGGCTCGCCGA 27773 29 89.7 31 ...........T.G...........C... ACGACGGAGACATCCATCGAGCTGGTCACGG 27833 29 86.2 32 ...........T.G...........CT.. GGTGTGCAGAGGATCGGGATGGTCATCGCGGT CA [27851] 27896 29 79.3 32 ...........CTG..T.......CT... ATCCAGATCGCGTGCGATCTGGAGAAGGTGAG 27957 29 82.8 32 A.......T..G.....A..........T GAGTACCAGAAGCCCGCCGCGAGCATCCGTGC 28018 29 72.4 32 ...T..T....T.GT.TA..........G ATCTGCGCGGCCGTGATGGTCTTCAAGGTCAA 28079 29 75.9 32 ..AT.T..G..G..T..........C... TGCGAGAGGGTGCTCTGATTCCTGCTCTGCTC 28140 29 89.7 32 ...........T.G...........C... TTCGTCGAGATCCCCACTGCCGGTGGCTGTTG 28201 29 79.3 32 .....T..T..CTGG.............. TGGCGGTCAAAGACGAGCCCGCCGCGCTCGAC 28262 29 93.1 32 ...........G.........G....... AAGTTCGCGGCTTGGAAGGATGGCGGCGAGAT 28323 29 86.2 31 ...T.......G..T..........C... CGAGGGGCACCGCATGAGCGGGCCCGAGCAC 28383 27 86.2 28 ..........--.....A......A.... GGCAGCGGCAGGGGGGAGGCGACTTCGG 28438 29 86.2 32 ...........G....T....G.A..... GCCCGCCTCGCCGCCTGGCGCACGCTGACGGA 28499 28 75.9 52 ...T.......G.....A..CG...-..G TGGCGGGGGAGCGGACCACCGCCTACGGCCGGCCCCGCGCCCGGCCTCCGTC 28579 29 89.7 32 T..........G.............C... ACGTCGATCAGGTAGTCCTCCGCGCCGCCCTG 28640 29 89.7 0 ...........T.G...........C... | ========== ====== ====== ====== ============================= ==================================================================== ================== 58 29 87.9 33 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : CGCCCGTGGAGGTCTACCTCCGGTTGCGGGTGACCTCGGGGTTGAGCGCGAAGACTGTGGAGGCCGCCGAGGCGGGCCTGCCGAACACCTGGCACGGCGTAACGGTGCTGTGTGGGGATGAGCCGGTCGGGATGGGTCGTGTGATCGGAGACGGTGGTTGCTTCTTCCAGATCGTTGACATCTGTGTCGCGCCTCAGCACCAGGGGCGCGGCCTGGGGAAGAAGATCATGGCGGAGTTGATGTGTGAGCTGGAGCGGAGGGCGCCGGACGGTGCGTATGTCTCGCTGATCGCTGACGGCGATGCCCGGTTCCTGTATGAAAAGTTCGGATTCCGGCAGACAGCACCGGCGTCGGTCGGTATGTACCTCACTGTGTGACGGAGCCGGGCTGTGGTCGCGACGGGCCCGGGTCCAGGAGGCGTCAGCCGATGGTCGGCTTCTTCGTCCAGTCGGTCGGTGGGCCTTTGCGGGTGAGGCGGCGGGTCGTGAGGGTATCGTCGC # Right flank : CTTCAAGGCCGTCTTCGGCGCCGGCGCGATCTCCTGAAGCAATAACGCGGCATCGCCACTCGCGACACCTAGACCGTCGAGTCCTATGGAGCAGCCGTCACTCTTGTGTCATTCCTGATGGGGCCTGGCATTTGACGACAGAACCCAGGGCGGCTCGGAATCTTCGGAACGTGACGCCCGGCGTGGCCCGGGCTGCTAGCGTCCTGTTCCGTTCGGGCCGTAACCGTTAAGAGCAAGGGGGGCGGTGGCGCGTGAGTGGTGTCGTGGGCTTATCCGGTGGGGGTGTTCGGCCTCGGTGGGATCCTCGGGAGTCCCCGTGCATCAGGGTGTCGATGCTCGATGACCGGCTCGTCGAGCTGAACCTGGTGGAGCTGCTCCACGATGCCGACGGCGTGCGGGCCGTGGAAGGCGGCACGCCGGGCGAACAGGTCGCGGTCGTCGAGTTCCTGCTGGCGATCTGCTACGCCTCCGGCACCTATCCGGAGTCGGCGGCGGAGTGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [41-94] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 38922-42791 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBS01000061.1 Streptomyces hydrogenans strain JCM 4771 sequence061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 38922 29 82.8 32 T.......T..C.G...........T... TCGAACTGCGCAGCCGCCACGCGGTGTTCGTC 38983 29 86.2 33 ....C......T.G............T.. ACGGAGTGGGTACAGACCGTGCCCGACCACGTG 39045 29 82.8 32 ...........CTG..T........T... GCCTTCAGCACGGCCTCGTGCATCGGGATGTT 39106 29 82.8 32 ...........CTG........C..T... CGGTCGAGCTTGTTCACGATCGGACCGGCCAC 39167 29 82.8 32 ......T....C.GT..........T... TCCTCGAGGGCGTCGCCCATCTTGTCCAGCTC 39228 29 82.8 25 .....T....T..T..........C..T. ACCCCCTTCCTCTCCCACCGCTCAT C [39252] Deletion [39282] 39283 29 75.9 94 .........T.......A.A.G...G.TT GTGGGAGCCAGGGTTGGGGCTGGGGGTTTTGTCTGATTCGGTGAGAGTTACTTGGGAGCGGGTCGGCGTCGGGTAGAACTGCAGGTCAGGAAGT CTT [39304] 39409 29 86.2 32 ..........AT.G...........C... AACATTGGCCACCTGCCGACCAAGATCCCGAC 39470 29 93.1 32 .............A...........C... AGGCCCGGGGCGGTGGCGGTGCTGGTGGCGGT T [39492] 39532 29 82.8 32 ...........CTG..........TC... GTCCGCGCGCTGCGGGGCAACCCCGGTGGCCG 39593 29 86.2 32 ...........CTA...........T... GCGGTCCAGACCGCGTACGACAAGAAGTTCGG 39654 28 79.3 32 .....-..T..T.G...........TT.. GACACGCGCGTTCCGCCGTCGTTGAACGGGAT 39714 29 65.5 26 ...........C.G..A...CCCC.TT.G ACGGCTGCCTTGGCGATGTCCTCGGG 39769 29 82.8 86 A............T.......C...GG.. AGGGGTAGGGCTGGGGGGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGGGGGTCGGCGTCGGGTAGAACTGCAGGTCAGGAAGT TGCG [39792] 39888 29 89.7 32 ...........C.G...........C... TTCCACACCTCGGCTGGGAGGTAGAGGGTGGC 39949 29 69.0 32 .....T.TT..TTGT..A.......T... CGCTCGGCGAGGCCGGACACCGTCCGGCTCGT 40010 29 93.1 33 .......T...C................. GTCCCGCCCCTCTGGGAGCGGTAGCCCCCCCGG 40072 27 86.2 32 ..AT.........--.............. GACGCTCGCAACCCCGAGGCCGCCCCCGGCCA 40131 29 86.2 28 ...........CTG...........C... CGGCCGGCCCGGGATCTTCCCGGGGTGG 40188 29 72.4 31 TG....T.T..C.G.......G...C... CCGCGATGGACGACCCGCGGAGCTGGTTCGA 40248 29 89.7 32 ......T..................CT.. ACCTTCGGGTTCAGGAACAGCTCGCGCGGGAC 40309 29 89.7 32 ...T..................C..C... TCCAGACGGCCGGTCTTGTCGTCGGCGCGGGT 40370 29 72.4 31 .C.........C.GA..A..A.G..C... TGCGTACCGCGAACTGGCACCGGTCCATGCT 40430 29 89.7 31 ............T.T.............T GCGGCGGCCGGCAACCAAATCCTCGCCCAGG 40491 29 89.7 32 .......T..............A..T... GCTCTGCGGCAGGGCAGCGGGGTCCGCCTCGA 40552 29 82.8 32 ...T......T.....A.....C..T... GAGCCGAACGAGGTCTACGGTGGCGACGCGGT 40613 29 93.1 32 ...........T.G............... GCGCCGCTGACACTGGGCATGCTGGAGTCCGG 40674 29 89.7 31 ...........T.G...........C... ACCGAGGGAACGCCAGGAACGCTCCCGTTCT 40734 29 100.0 32 ............................. TCGAATGTCTCCGGGACCTCGCCCCACGCGTC 40795 28 93.1 32 .....-.......T............... GAGGCCGACGTCCGTGCGCTCCTGGCGTCGGC 40855 29 89.7 32 .........A......G........T... GCGGTGCCGCCCGCGATCATGTCGTTCCACTG 40916 29 89.7 32 ...........TTG............... CCAAACGCTTCGGCGTGCGACCGGTTCGACGT 40977 29 89.7 31 ............G.T..........G... CTGGACCATCTAGCCATCGGGCACTGGGGTA 41038 29 96.6 30 ......T...................... CGCCGGTCGGCAGGGAGCACGAGACCCTGG T [41053] 41098 29 75.9 32 TCTA......T...T........A..... GCCCGCCTCGCCGCCTGGCGCACGCTGACGGA 41159 29 75.9 51 ...T.............A..CC...C.GT GGCGGGGGAGTGGGCCACCGCCCACGGCCGGCCCCGCGCCTGGCCTCCGCC 41239 29 82.8 32 T..........CTG...........T... CGCACCACGCCCGGCATCGAGCAGTCGGCCGC 41300 29 82.8 32 .......T...CTG...........T... ATCAGGACGAAGCAGACCACTCGGTGGCTGTC 41361 29 100.0 32 ............................. CCCGAGCAGCAGGAGCAGATCGTGGCCATGCT 41422 28 93.1 32 ...........T.-............... GAGGCGTCGCCCGGCTGGTCCACACCGAAGCA G [41433] 41483 29 89.7 32 ...........C.G...........T... TTGTGGCCGGGCGGGAGCCGGTCGAGCCAGTC 41544 29 82.8 32 .......T...T.G......A....T... ATGGGCGCCCCCTCGGGTGTGCTGGGTTGGTG 41605 29 82.8 32 T..........T.G......C....T... GACGGGACGAAGTGCAGGCCCTCGAACGGGGT 41666 29 86.2 32 ...........CTG...........T... CCGACCACCGCGATCGCGACGTTGCTAACGAT 41727 29 86.2 32 ...........CTG...........C... TCGCTTATCCGCGAGGGCCTGGCGACCCGTCT 41788 29 79.3 32 .......T.C.C.GT..........C... CACGCGGCCACGCTCGCCCTGAATAAGGGCCA 41849 29 82.8 32 T..T.......T.G.......G....... CGGACGTTCTCGGCGACGAGCCGGCGTGAGGG 41910 29 82.8 32 .........A.CTG..T............ GACAAGAAGACCGCCCTCTGGCAGATGGGCGA 41971 29 89.7 32 ..........T...........C..C... GAGGTCCCCGCTTCGGTCCAGGATGCCTTCAA 42032 29 86.2 31 .........A..T............C.T. GGCCACACCATGACGCGGCAGAACGCCGTGA 42093 29 93.1 32 G..T......................... GGCTACCACCAGGCCAAGTCGCGCACCGTCTG 42154 29 89.7 32 ........T..C.A............... GAGCTGCCCTACGACCTGGGTGGCTTCCGTGA 42215 29 79.3 32 .....T.....T.G........C..TT.. GACCGCACGCTCATCACCGGGCCCATCCCCGT 42276 29 89.7 32 .....T.....C.G............... ATCACGCTCTCGCGGCAGGTGATGCACGAGGG 42337 29 89.7 32 ...........C.GA.............. GGGAGGTCGAGGAGGAGGGCGACGGGGGCGAG 42398 29 89.7 32 ...........C.G...........G... GGACCACGGACCTGGGCGACTTGGTCGCCGCC 42459 29 86.2 32 ........T..C.GT.............. AACGGCATCCGCAAGGTCTGGAACCTGGTCAC 42520 29 89.7 32 ..........TA.G............... CCCCTTTACCCAGAGCTGATCAAGGTTCTGGA 42581 28 79.3 32 .....-.....C.G..T.....G..G... TGCTTGCCGCGCCCGCCGAAGTGCGCGCCGAG 42641 29 89.7 32 .............G...........C..G GACGTGCCCTTTGCCCTCGGGCTCATGGCTTC 42702 29 82.8 32 ...........CTG..T........C... GTGGCGCTCGCGTTCTTCGGCGGCAAGGACTC 42763 29 69.0 0 ...T........T.T......C.CAC.TT | ========== ====== ====== ====== ============================= ============================================================================================== ================== 62 29 85.3 34 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CCCCGCTCGCCCGGGGATGGACCCCGGACGACGGACGACGGAGGCGCGGCCGTCGGGCTCACGCTGCTTTCCTGCCCGCGCGGGGATGGTCCCGCATCGCGGCCGTGATGGCGGCGGCGAGAGGCCTGCTCCCCGCCAGCGCGGGGATGGCCCCGGCGCTGGCGTCCCCGACCGGCTGTCATTCAGCCGGTGGGCCTGCACGCCCGCAGGCCTGGCCGTGGCGGGGGAGTGAACCGCTACCCCACCACGGCCAGGCCCGTGCCCGCGCCGCGTACCGGCCGCCGTCCGTTCGGAGGCGGCCCCGCTGGCCCCGGACACCCCGCCCCGCGGAAGTAAAGCCCGGCTTTTCTCTCGTGCCGGCCGCCGTCCCGCGCCCCGGTAGGGGCGGGTCCAGCCCGTGCCGGGGCGCGGGCCAGGCCCGGTGCCCAGCGCGCTCTGCGGGCAGTATCACAGGGCCGCCCCTGCACGCCGTCTGACGGCGCCTCTGCCCCGCCTGGGTG # Right flank : TCCGGTGTGGGTGCTGAAGCCGCCTTTTGATGGTGGTGCTGTGTCGGTTCTTCGGTCGCTGCTGTCGGTGGGTGTGGTGAGCGGGGGAGCGGTCATGGTGGTCGTTCGCCACCGAGGTCGCCATGCTCGGGGGTGCTCACCACCATGCTCGCCACCGGACTCACCATGTCCGGGGTTGCTCACCACGGGGCTCACCATGGGTGGCCCCTGGGGGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGCGTGCTGGCTTCGGGTAGAACTGCAGGTCAGGAAGACTGCTCCCCGCGCACGCGGGGATGGCCCCACCACGGTTGATCAGGCCGGCTGGCTCGACCCCTGCTCCCCGCGCACGCGGGGATGGCCCCCAGGCCCGGACCATCTCGTTCTCCATGTCGAGTTGCTCCCCGCACCCGCGGGGATGGCCCCGCAAGGCTCAGCGCAAGCTGCGCGCGCGGTTCCTGCTCCCCGCGCACGCGGGGATGGCCCCGACGTC # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.26, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.05, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [63-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 43073-43755 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBS01000061.1 Streptomyces hydrogenans strain JCM 4771 sequence061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43073 29 100.0 32 ............................. ACCACGGTTGATCAGGCCGGCTGGCTCGACCC 43134 29 100.0 32 ............................. CAGGCCCGGACCATCTCGTTCTCCATGTCGAG 43195 29 89.7 32 T..........A.C............... GCAAGGCTCAGCGCAAGCTGCGCGCGCGGTTC 43256 29 100.0 32 ............................. GACGTCGCCGACGGCGTGCAGTCGGGCGAGTC 43317 29 96.6 32 .........................A... TCGCCCAGTTCCTTGTTGAGCCGGCCCCCGAC 43378 28 82.8 32 ...T.......T.G...-....G...... AGCACTCCGGCGCGAGGCCGCCGACGATCCGA 43438 27 82.8 32 ...T........--..T........A... ACCGACCTGATGCCCGAAGAGCGGCAGGACGT 43497 29 79.3 20 .............C...A..TCC.T.... CTCTGCCGGGAGCTCGCAGC Deletion [43546] 43546 29 75.9 32 G....GT...TA.G...........A... ACTCCGCTGGGCCGCGCCGCAGACCTCACCAT 43607 29 82.8 32 .C.........C.G.........T.T... GTCGAGCGGGCTGCGGGCGTGAGACGAGGACG 43668 27 89.7 32 ............--...........T... GCCTCGATTTCCAGCGGCGCGCGCTGGAGATC 43727 29 89.7 0 .............C........C..T... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 89.1 31 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GTTCTGGACTGCTCCCGCCCGCGTGGGGAGGGGCCCTGCTTGCCGCGCCCGCCGAAGTGCGCGCCGAGCTGCTCCCCGCGCGCGCGGGGATGGCCCGGACGTGCCCTTTGCCCTCGGGCTCATGGCTTCCTGCTCCCCGCCTGCGTGGGGATGGCCCCGTGGCGCTCGCGTTCTTCGGCGGCAAGGACTCCTGTTCCCCGCGTCTGCGGGGCTCACCTTCCGGTGTGGGTGCTGAAGCCGCCTTTTGATGGTGGTGCTGTGTCGGTTCTTCGGTCGCTGCTGTCGGTGGGTGTGGTGAGCGGGGGAGCGGTCATGGTGGTCGTTCGCCACCGAGGTCGCCATGCTCGGGGGTGCTCACCACCATGCTCGCCACCGGACTCACCATGTCCGGGGTTGCTCACCACGGGGCTCACCATGGGTGGCCCCTGGGGGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGCGTGCTGGCTTCGGGTAGAACTGCAGGTCAGGAAGA # Right flank : CAAGTGGTTCGGCTACAACGTGGGTGACCCGAACCTGTGTGGAACTCCACGTAATTCCCCATCAGCAGCATCAGGTTCCCCAGCCAAACGTTCGAACACGGCAATGGGTGTCGTCTGTGCTCCCGTCCGGACAATCCTGAGACGGCTTGCAGCAACCTCCGTATCTTGGCGCCATGACGGACGAGGAAGAACCGAAGCTCTACGTGAACCGCTGGGGCGACACGTCAGATCCAACCCTGGAGCGGCGGGGGCCCCGCCAGGACGCGTGCTCGTGCTTCGACCAGTCCAGGTCACGCCCGCGAGCCCGCGTCGGGTTCCACACCGAACGGCAGGACGCCTCTGCCCCGGGTTGGCAGCACCTGCTGGAGCTGGTCGATGAGGCCGCTGCCGACGGCCGTGAAGAGTTCCGTCCCCTCACCGAGCTGAGCCCGGAAGAGCGGCGGCAGGTCGTCACCCTGCCGCCGAGCATCGCCAGGCTGACGGCGGTCAAACACCTGGTG # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 46869-48266 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBS01000061.1 Streptomyces hydrogenans strain JCM 4771 sequence061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 46869 29 89.7 33 ...........T.G...A........... CGCCTGCACCAGGATCAGCAGTGCGTCCGTCAG 46931 29 89.7 32 ...........T.G...A........... ACCAACGACACCGGGAGCCCCGAGGGCAACGG 46992 29 89.7 32 ...........T.G...A........... CTGACCCCCTACAAGCACCCCGCCAACCCGAA 47053 29 93.1 33 ...........C.G............... GCCCACGACACCGACGGCAACGCCCGCTTCTAC 47115 29 93.1 32 ...........C.G............... GACGTGCGAGACCGCGAGAACCTCAACCTCAT 47176 29 86.2 32 ...T..T..TT.................. CAGGTCAAGGTCGCGAAGAAGATCCTGGAGGA 47237 29 72.4 119 ........T.....T.....CT..TT.GG GTCTCGGTCGCTTGGGTCGCTGTTTGTCGCCGGCGGGGGAGGGGGTGGGTGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGGGGGTTGCCGTCGGGTAGAACTGCAGGTCAGGCAGC 47385 29 96.6 31 ...........G................. CCCTGACCTGCGCGAACGTACGCGGCCACGC 47445 29 96.6 32 ...........G................. TTCGCCGTCCGCGACAGCGTCGCGATCGCAGC 47506 29 100.0 32 ............................. GGCCGAGAGTCCTCGTCTTCGGTGACCAGCCA 47567 29 100.0 32 ............................. AACGGGGTGGACCCCGCCCCCAGCGGTCGCGG 47628 29 96.6 32 ............................T CCGTGGGCCGGACGCTCTCCGCGGGCACGGCG 47689 29 100.0 32 ............................. CTCCCGAACCCGCGAGCCCCCGCACCCCTTGG 47750 29 96.6 32 .....T....................... ACCCCGAGCGGAACCATCTCCCGCTCGCCATC 47811 29 100.0 32 ............................. GGCACACCGCGCGCACACGGCCTTCGCCGAAT 47872 29 100.0 32 ............................. GCCACCCCGCCCGCCCTCGGCGCCGTGCAGTA 47933 29 100.0 32 ............................. ATGTCCCCCGCCGCGCGGAAGATGCTCGCAGA 47994 29 100.0 32 ............................. CCCGGCAACGACGGCAGCAACGGCGACGACAA 48055 29 100.0 32 ............................. AACGTGCAGCGATTCAGGTTCGACCTGACTCC 48116 29 100.0 32 ............................. CCCGAAGACCACGACGGCCAGGTCCCGCGCGC 48177 29 96.6 32 ...........G................. ACGGTCCTCGACGGCATCCGCACGGTGTCGTC 48238 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 22 29 95.3 36 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : GCTCCCCGCGCCTGCGGGGATGGACCCGCCACCGCGCTCACGGTCACCACCGCGCTCCACTGCTCCCCGCGCCCGCGGGGATGGACCCCATCACGGGCTCGTCGCCCCGGCCGGCGCCACCTGCTCCCCGCCCGCGGGGGATGGCTCCCGCAGCGGGCTGAATTGCGGGTGGGTCAGGCACTGCTTCCCGTGCCTGCGGGACTCATCTTCGGGTGTGGGTGCTGGAGCCGGGTTTGGTGGTGGGGTTGTGTCGGTTCTTCGGTCGCTTGGGTTGCTGCTGTCGGTGGGTGTGGTGAGCGGGGGAGTGGTCATGGTGGTCGTTCGCTACCGAGGTCGCCATGCTCGGGGGTGCTCACCACCGAACTCACCATGCCGGGGGTTGCTCACCACGGGGCTCACCACAGTGCTCACCATGGGCGGCCCCTGGGGGTGTTTTGTCTGTTTCGGTGAAGGTTGCTCGGGAGCGTGCTGGCGTGGGGTAGAACTGCAGGTCAGGAAGA # Right flank : CGCCACCCCGCCCGCCCTCGGCGCCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGACGGCATCCGCACGGTGTCGTCCTGCTCCCCGCACCCGCGGGGATGGACCCTCGACAGCTCGTTCATGCGGGCCGGCTTCACCGCTGCTCCCCGCACCCGCGGGGATGGACCCGCGGCCCGGCACGGGTCGGGGTTCGTGACGTCCTGCTCCCCGCACCCGCGGGGATGGACCCATGTCCCCGAGGTTGAAGCGGGCAATCGTGGCCTGCTCCCCGCACCCGCGGGGATGGACCCTTCACGCCCATGGGGTGGGTGCCGTGCTCGCCCTGCTCCCCGCACCCGCGGGGATGGACCCAGGGCGAACGGGGCGAACAGCAAGCCAAGGAGCTGCTCCCCGCACCCGCGGGGATGGACCCGCCACCCGGAGG # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 48419-48875 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBS01000061.1 Streptomyces hydrogenans strain JCM 4771 sequence061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48419 29 100.0 33 ............................. TCGACAGCTCGTTCATGCGGGCCGGCTTCACCG 48481 29 100.0 32 ............................. GCGGCCCGGCACGGGTCGGGGTTCGTGACGTC 48542 29 100.0 32 ............................. ATGTCCCCGAGGTTGAAGCGGGCAATCGTGGC 48603 29 100.0 32 ............................. TTCACGCCCATGGGGTGGGTGCCGTGCTCGCC 48664 29 100.0 32 ............................. AGGGCGAACGGGGCGAACAGCAAGCCAAGGAG 48725 29 100.0 32 ............................. GCCACCCGGAGGAGAGCCCCGTGGACGCCGAC 48786 29 100.0 32 ............................. TCGACGCCATTGCCGCGCTCGGAGCCGCCGCC 48847 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : GGCGCCGTGCAGTACTGCTCCCCGCACCCGCGGGGATGGACCCATGTCCCCCGCCGCGCGGAAGATGCTCGCAGACTGCTCCCCGCACCCGCGGGGATGGACCCCCCGGCAACGACGGCAGCAACGGCGACGACAACTGCTCCCCGCACCCGCGGGGATGGACCCAACGTGCAGCGATTCAGGTTCGACCTGACTCCCTGCTCCCCGCACCCGCGGGGATGGACCCCCCGAAGACCACGACGGCCAGGTCCCGCGCGCCTGCTCCCCGCGCCCGCGGGGATGGACCCACGGTCCTCGACGGCATCCGCACGGTGTCGTCCTGCTCCCCGCACCCGCGGGGATGGACCCGCCACCCCGCCCGCCCTCGGCGCCGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGACGGCATCCGCACGGTGTCGTC # Right flank : TCGACCAGATCATCGGAGCCTCCTCCGACCACCTGCTCCCTGTCTAGTGTGATGCGCCAGAAATCCTGAGGGTTGGTAAGTACCCTGTTGTCATGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //