Array 1 2043907-2039859 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPES01000001.1 Paraburkholderia hayleyella strain BhQS11 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2043906 28 100.0 32 ............................ TGAGCAGCGTCGGGCCGCGCTCAAGCGTCCGG 2043846 28 100.0 32 ............................ TGGCACTGTGCCGCATCGCTTCCGCAAATGGG 2043786 28 100.0 32 ............................ GAATGAGAAACAAATAAAAGCGGCTTTGCGGC 2043726 28 100.0 32 ............................ AAGGTCTAGCGCGGCGCAAACATCAGCGGCAA 2043666 28 100.0 32 ............................ TCGGTAATCGCGCGCTCATTGCTTGCCATAGC 2043606 28 100.0 32 ............................ TTGATGATTTCGTTCATGTCACACCTCTGATT 2043546 28 100.0 32 ............................ TACCAGACTTATATCGACCGGGGCTATTTCCG 2043486 28 100.0 32 ............................ GATAATTAATGTTTCCGACTCAAAGTCCTGCC 2043426 28 100.0 32 ............................ GTGCGGGCATTAGCGAGGCGGCGCGTGAATAT 2043366 28 100.0 32 ............................ GATCCAGCGCATCGGCGGAATCGCCATGCTGT 2043306 28 100.0 32 ............................ TTACGTGTTTCTTCATGTGATTTTGCTGTGCG 2043246 28 100.0 32 ............................ GAGCATGTCGATCATGTATGCTCCGCCCTGTT 2043186 28 100.0 32 ............................ CTCGAGCACTCTCTATCGCGCGGACGTCGATC 2043126 28 100.0 32 ............................ ACACTGCGTCGCGCGGCACGTCGAGAAGATGG 2043066 28 100.0 32 ............................ AAGAATGTGCGGGACAACATACTCGGCCACAC 2043006 28 100.0 32 ............................ CTGCCATCAGCATCATGGTGGCGTAGGTGTGC 2042946 28 100.0 32 ............................ AGGCTGCGGCGCAAAAAATCGAGGCACTCGAT 2042886 28 100.0 32 ............................ ATTTGAAATCCAATTTGCTCGGCAACCCAGGA 2042826 28 100.0 32 ............................ GCGCTGCATGGCCGCGAGCGTGTTCGTGAACG 2042766 28 100.0 32 ............................ CAGCATCCACTTCAAAAGTGTGAGATCTGTTC 2042706 28 100.0 32 ............................ TCACGATATCGGCGTATGAGATCGGTTTCATT 2042646 28 100.0 32 ............................ AGAGCGCGTCATCGGCAACTGGCTACCAGAGC 2042586 28 100.0 32 ............................ AGTTCACAGAAACGTTTAATGCGCGCGATACC 2042526 28 100.0 32 ............................ TGTTCTTCTCATGTGATATTTACTCGATGACC 2042466 28 96.4 32 ...C........................ ATGTCAGCAAATCGCCGTCAACGTCAAACGGT 2042406 28 96.4 32 ...C........................ TTGAATTTCTGCGGGGACGGACAGCGCGTCGC 2042346 28 96.4 32 ...C........................ AATCAAGATACTCCACCGAGTCCGGATCGACG 2042286 28 96.4 32 ...C........................ GCAGCTGCTGCGCTGACGCTGCGATGATGATC 2042226 28 96.4 32 ...C........................ GCGCATCCGCAGGCTTGAACGAGTTCTAACGC 2042166 28 96.4 32 ...C........................ GGCCTGAGGGACGAAAAATGATGAACGTTCTC 2042106 28 96.4 32 ...C........................ ATCGAAATTTATTGCAAATACTTGCCCCTCCC 2042046 28 96.4 32 ...C........................ CCGCCGAAGCCTGGTTTCTCGGCATCAAAAAA 2041986 28 96.4 32 ...C........................ GGACGGGTTAATCGGTGCAGACGGCGGTTACG 2041926 28 96.4 32 ...C........................ ATCAAGCTGGGCGTCGCTGTCATACATTACGC 2041866 28 96.4 32 ...C........................ ATAGCGCGCCTTCCCGGGCCGGTCTTCAACCG 2041806 28 100.0 32 ............................ ACGATGGCACTGTCGAAGCGTGCAAGTCCGGC 2041746 28 100.0 32 ............................ ACATCGAAACGATTTTCTCCGCGCTCGACAGC 2041686 28 96.4 32 ........................A... AAGTATCGTTTGGAAAAGCCCACCCCTTTTTG 2041626 28 100.0 32 ............................ AGAACGCGTGCGAAGCTGACTCTTTGTAGCGG 2041566 28 100.0 32 ............................ GCTCCAAAAATCGCCGCATCGCCGATTTTCCC 2041506 28 96.4 32 ...........T................ AGAACGGTATTCCCGATTTTCGAAGCCACGCG 2041446 28 96.4 32 ...........T................ GTACAAGTCCGCTCTGCACAAGTCCGCTTCGC 2041386 28 96.4 32 ...........T................ CGGTCGCAGCACCGCCAGTCGCGCGGCCTCTT 2041326 28 96.4 32 ...........T................ GGATCGCTTGAAGTTTATGCCGGCGCGTGGTC 2041266 28 96.4 32 ...........T................ ATCAACGCGCGAGTCAACGCCCGCCACTGCCT 2041206 28 96.4 32 ...........T................ GCAGTGCTATAGCCAATCGGAAGCGACAGCAG 2041146 28 96.4 32 ...........T................ TGCTCGTCTGTTACGCATACAGCGCGGTAGCC 2041086 28 100.0 32 ............................ ATCCGCGCTCTCTAATTTAGCTTCGATGTCTT 2041026 28 100.0 32 ............................ TCCCCAGGAGATGAACATGACCACGATTCAAA 2040966 28 100.0 32 ............................ ATTAATAGGATTAACGACTACGGCCGCGCAGC 2040906 28 100.0 32 ............................ AGAATTCAGCGAAGAGTGGAAGCGCTGGATCA 2040846 28 96.4 32 ...........T................ GATTATTCCCGCCGGAGCATTACTTCCGTTTT 2040786 28 96.4 31 ...........G................ AAAAAGTATCCCCGACTTTCGAAGCCACGCG 2040727 28 96.4 32 ...........T................ TATATCGTTCAGCGTGCAGTGGCCAAGGCTTC 2040667 28 96.4 32 ...........T................ ATAATCATGGCGGCGTCAACAGCACCCGCATA 2040607 28 96.4 32 ...........T................ ATTCGCAGAAAAGCGGGTCGCGGGGCAGCATT 2040547 28 96.4 32 ...........T................ GAGCAGATAAAGATGATGCCGAGTCGAAACAG 2040487 28 96.4 32 ...........T................ GGGTACGGATATCACAACGTCTGGAACATAAA 2040427 28 96.4 32 ...........T................ CGCCAGCCGGCGTGACGAGCGACGCCGCGCTG 2040367 28 100.0 32 ............................ AGACGATGAGCGCGACCCGTTCGAAGGCACTG 2040307 28 100.0 32 ............................ TGCACGTACTCACACAGCGGCGATGCTAAAAC 2040247 28 100.0 33 ............................ GTCATCACGCCGATAGCGCGCGCGAGATCACAC 2040186 28 96.4 32 ...C........................ AAGCTGGGCGAGGAAATCCGCAACACTATCGA 2040126 28 96.4 32 ...C........................ GATTGCGCAAAAGACCCTCCAGCTCGTGACAT 2040066 28 92.9 32 .............G.....A........ ACTCGGAAAAGCCGCGAGAACGGCCTGTAATA 2040006 28 100.0 32 ............................ CATGATCCATGCGGGCAGCTTACGTGACACAA 2039946 28 96.4 32 .................T.......... TTGCAACGTATTCAATGCGCCAGATTCGATCC 2039886 28 96.4 0 ....T....................... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 98.3 32 GTTTGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : GCATGCGCGATCACGTGAAGCTGAGCGCCGCCATGCCGGTACCACCGGGGGCTGGGCATCGTATCGTGCAACGGCGCCAGTTCAAGACCAATGCCGAACGTTTGCGCCGCCGCCGCATGCGACGCAAGGGCGAGACCGCCGGACAGGCGGCGGCGATTCCTGACAGTATTGAACGACGGCCTGATTTGCCTTATGTGCAACTGCGCAGCGCCAGCACCGGGCAAGCGTTTTGCCTGTTTGTCGAGCAGGAGACGAGGCTAACCGGGGCGGTGTCGGGGCGGTTCAATAGTTATGGCCTGAGCCTGGGAGCGAGCGTGCCGTGGTTTTAATCGCTCGCATGATTTCAAACCTTTTTTCCACCCTTTTTTCCACCCTTTTTTTGTGGGGAGGTTTGTTTCTATATAAATCAGTGGGTTAGGAGTGGGCCGGAAATTTGGGGGAATTCCGGCCTGGGAGAGGATGTTCTTTGATAATCAATGGGTTGGGGTTGAGATGGGGTA # Right flank : ACGACGGATCAACAGCGTTGTCGAACACGTCTGTTATAGCGTCAGCTATCCGTTGCGTTCCTGTCTGTTTTGCGCCGCGCCAACCTGTTTTTCTAACGACCGCTCCAGCGCGCTGACCCCGTCCGGGTCGGGCTCGCTCCATTGAGCAAAGTATGAATGCACCGTGCACCGTGCGCCATTTCGACAACTCCCGGGGAAGCATCCTCCACTGGCGCCCGCTTCGCAGCAGATACAGCACCGCGCAGAACACTTCGTACAAGTCCACCGTAGTCGGCTTCGTGCGCTTCCTCATGCTTTGCAGCGACGGCAGGCCCTTCGAAATCGCTAGCAGGCCGCCCGCGGGCGGTTCAGGCTGCGGCGTGAGGCCGTGCGTCATTGACCGGAAAATCGCCACCCCCTCCGCGCTTCCGGGCTTCACTTGACAGGAAGGTTTGGGTACACGGGGCAATCCGGCCCGGCAGACCTTGTAGCGTGAGATTCCAGGCGTTTCGAGGTGCCCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2466651-2465955 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPES01000001.1 Paraburkholderia hayleyella strain BhQS11 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2466650 36 100.0 30 .................................... ACTCTTCTTCGACGTAAGCTTGAACTTTTG 2466584 36 100.0 30 .................................... ACTCTTCTTCGACGTAAGCTTGAACTTTTG 2466518 36 100.0 30 .................................... CGATAAAGCCATGCAGGCCATCAAGGTCTT 2466452 36 100.0 30 .................................... ACATATTCCGGCGAATGCGCGTGTCTCATC 2466386 36 100.0 30 .................................... GGTAGTCGACAACGCCCCTCTGCTGGTCAA 2466320 36 100.0 30 .................................... TTTGTGACGATGCGGGCCTGACTCGATATG 2466254 36 100.0 30 .................................... TTGAAACAGGCGCATCGTATTGCGCAGTGC 2466188 36 100.0 30 .................................... TGCCGTCGTTGCCGTCTGCGAAATCGCAGG 2466122 36 97.2 30 ..............A..................... CGGGAAGCCATCATTTAGTGATGCCGCGCC 2466056 36 86.1 30 ....C....................AA.T...T... GCGAAACATCATGAAGAAACGAAGCCCCGG 2465990 36 97.2 0 ......A............................. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 ATTGTAGGCTTCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : GTGGATGCAACGGTGTCAAGTCTTTCGGGTATCGTATTGAATGGTACCCGGATTGAAAGCCTGGTTTTGCCGCTGTTTGATGTTTCAGTTCATGACGATTTGTGATCATGAGCCAAATTACTCGTCGATATATGCGTCTACTTGTTTTCTTTGACTTGCCAGTTACGACTCGGGAAAAACGTCGGACATATACTATTTTCCGTCGGTTTCTGATTCAGGACGGTTACGACATGATCCAGTGGTCGGTTTACGGGCGAATGGTGAATGGTTTCGATGATGCGGAAAAGCACATGAAACGTCTCGCCAACAATCTTCCAAAAGAGGGCTCGATACGCTGTCTTCAGGTTAGCGAGAAGCAGTTTGCCAATATGAAGTTGCTGGTCGGGTTGCAAAGTTTTCAGGAAAAGAAGGTCAATGCCAACCAGATGCTGCTTTTTTGAAGGAAAAAAAGCGTCGGAATTCCTTGCAAAGCTATGCTGGCAGGGGATTCCGGCGGGGAT # Right flank : TGCGAACGGCACCGTCTTTATGACCGTTCATTGTAAGCGTCCGGGATGGAAAAAGGCGTCCCAAAAAAACCATTGATGAGGCTCGACGATGCCCCCAAACGTTCAAAAAACGCATCGAGGATCCCATCATAAAAAGCCATCACAAGCATAAAAAGCCATCACAAGCACACATAAAACATACGGCTGGTTGCTGGCTGTCTGAGCGACACGGCGCATGCCCGACGCTTTATTTTCTGCGGTCCCCATACGCCAATCCGCTAGCCTCCCTATCTCTATTTAAGTATCGCCGTAATTTTTGTATGCCTTCTTGAGCGGAGCGGCTAAATTACGGCATTCGGCATGCATGCCAATACCCGGCGCCGGTGTCGGCGGGCGATAGGCGCCGCGCCTTGCCAACCTGCTGCAGACCACTACAGACTGCGGCCAGTAACAGGCGTTGAAGCGGACAGCGAGTGCCGGCTGCCTGTGCTGCTCTTTCACGGAAAAGGGCAAAAGATAAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGGCTTCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //