Array 1 9471-9956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCH01000068.1 Mycobacterium tuberculosis strain Bir 97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 9471 37 100.0 33 ..................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCT 9541 37 100.0 33 ..................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGG 9611 29 75.7 1 T............................-------- T Deletion [9632] 9641 37 100.0 35 ..................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCA 9713 37 100.0 40 ..................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCG 9790 37 97.3 35 T.................................... ATTTCGACGACAATTCGTTGACCACGAATTTTCAG 9862 37 91.9 19 .............................T..C.G.. CCAAAACCCCGAGAGGGGT T,T [9890,9895] Deletion [9918] 9920 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 95.6 28 AGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TTTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAG # Right flank : CCAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACACATCCCACGCGTTACCGCTGGCGCGCATCATTCATCGAGTCGTCAGACCCAAAACCCCGAGAGGGGTGTCGTCAGACCCAAAACCCCGAGAGGGGTAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACACTCGGAATCCCATGTGCTGACAGCGGATTC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 10333-10871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCH01000068.1 Mycobacterium tuberculosis strain Bir 97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================ ================== 10333 33 75.8 26 .........................TGTCGTCA GACCCAAAACCCCGAGAGGGGTAGTC 10392 33 100.0 38 ................................. ACTCGGAATCCCATGTGCTGACAGCGGATTCGCATGTC 10463 33 100.0 44 ................................. CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTC 10540 33 100.0 37 ................................. CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTGTC 10610 30 78.8 0 .........................TA.TC--- - Deletion [10640] 10640 33 100.0 28 ................................. CTTGAATAACGCGCAGTGAATTTCGCGG 10701 33 97.0 44 A................................ TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGGGTC 10778 33 100.0 28 ................................. CTTGAATAACGCGCAGTGAATTTCGCGG 10839 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ============================================ ================== 9 33 94.3 31 GTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : ACGACAATTCGTTGACCACGAATTTTCAGAGTCGTCAGACCCAAAACCCCGAGAGGGTGTCGTCAGACCCAAAACCCCGAGAGGGGTAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACACATCCCACGCGTTACCGCTGGCGCGCATCATTCATCGAGTC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTGGTCGTCA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : ATCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 10998-12388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCH01000068.1 Mycobacterium tuberculosis strain Bir 97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 10998 28 100.0 44 ............................ ACGGAAACCGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 11070 28 100.0 45 ............................ ACGGAAACCCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 11143 28 100.0 42 ............................ ACGGAAACTCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 11213 28 100.0 51 ............................ ACGGAAACTCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA 11292 28 100.0 44 ............................ ACGGAAACTGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 11364 28 100.0 46 ............................ ACGGAAACTCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT 11438 28 100.0 2 ............................ TA Deletion [11468] 11468 28 100.0 43 ............................ ACGGAAACGCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 11539 28 100.0 2 ............................ TA Deletion [11569] 11569 28 100.0 45 ............................ ACGGAAACATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 11642 28 100.0 1 ............................ T Deletion [11671] 11671 28 100.0 2 ............................ TA Deletion [11701] 11701 28 100.0 44 ............................ ACGGAAACCCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 11773 28 96.4 42 ......G..................... ACGGAAACTCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 11843 28 100.0 48 ............................ ACGGAAACCCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 11919 28 100.0 1 ............................ T Deletion [11948] 11948 28 100.0 2 ............................ TA Deletion [11978] 11978 28 100.0 42 ............................ ACGGAAACCTGACGGCACGGAGCTTTCCGGCTTCTATCAGGT 12048 28 100.0 2 ............................ TA Deletion [12078] 12078 28 100.0 46 ............................ ACGGAAACTAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 12152 28 100.0 48 ............................ ACGGAAACACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 12228 28 96.4 46 ..................A......... ACGGAAACTTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 12302 28 100.0 1 ............................ T Deletion [12331] 12331 28 100.0 2 ............................ TA Deletion [12361] 12361 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================================== ================== 25 28 99.7 29 GTCGTCAGACCCAAAACCCCGAGAGGGG # Left flank : GGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTGTCGTCAGACCCAAAACCCCGAGAGGGGTAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCTTGAATAACGCGCAGTGAATTTCGCGGATCAGACCCAAAACCCCGAGAGGGGACGGAAACTTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCTTGAATAACGCGCAGTGAATTTCGCGGATCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GACGGAAACTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-1.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //