Array 1 32291-29273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYH01000062.1 Dickeya chrysanthemi strain L11 contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 32290 28 100.0 33 ............................ TCTCGTGTGATGAATCGCCAGATGCGGAGCTAT 32229 28 100.0 33 ............................ TATTTGATCTGCGTAGGCCGGTTGAGAGAGCGA 32168 28 100.0 33 ............................ CATATCTTCCGGCTTGTTGTAGTCATCAAGACA 32107 28 100.0 33 ............................ CAACAACTGGCGGTGCTTATGCTGAAGGGGAGG 32046 28 100.0 33 ............................ TGATCGACGATGGTGATGTGGTGGTTCAGTGGT 31985 28 100.0 33 ............................ TAAAAGAGGCGATCATGAAAAACCACATCACCG 31924 28 100.0 33 ............................ TCTATCGGGTGCGGTATCCGCTGTTTGTGGTGT 31863 28 100.0 33 ............................ TGATTCCGCGCCATGTGCTCGGCTCTCTCAGTC 31802 28 100.0 33 ............................ CGGGCCTGCATGTCGTTCAGTCCGTATTCATCA 31741 28 100.0 33 ............................ CGAGACCGCAGACTTATTCCCCTTTCGGGTGTT 31680 28 100.0 33 ............................ TGAAGGATAGGTGGCATGAGCTATCAAAAAAAT 31619 28 100.0 33 ............................ CAGGAGGGCATATGTCAGATCCGGCCACGGGCT 31558 28 100.0 33 ............................ TGCTAATCGCCTGCTGGTGAACACCATCCGCTC 31497 28 100.0 33 ............................ CGTGATATCGCCGTCATCGAATTTTGTGGCCAG 31436 28 100.0 33 ............................ TGTCCATGCCCTCGACAAGCAAGTCCATCGTGA 31375 28 100.0 33 ............................ TGCCGAAGAGCCTGGCCGGTACCGCGTTGCCAC 31314 28 100.0 33 ............................ TTGCACACAGAAGCCCGTAAATCGGGCGATAGA 31253 28 100.0 33 ............................ TTTTATCGCGCCCGGCTGCGCGACATCGTCAGG 31192 28 100.0 33 ............................ CTGGCAAGGCGCATCACCAGACTCAATGGGAGC 31131 28 100.0 33 ............................ CTCGGAGATGTGCAGGTGCGTGAGCGTATCAGA 31070 28 100.0 33 ............................ CGACAAGCTGATGCTTAAAGGGGACAAAGCGAA 31009 28 100.0 33 ............................ CCAAATCGCGGTACCGTCATGGGCGCCGATGTC 30948 28 100.0 33 ............................ CCGAGAGTCCATCAATCTTGCCGCGGCGCGTAA 30887 28 100.0 33 ............................ CTCAAACATGGTTGTGCGGTCGCGCTTGAGCGG 30826 28 100.0 33 ............................ CAGCTCATCAACGAAGAGTTGCTGCTCGATGGT 30765 28 100.0 33 ............................ TCACAGAGCAGGCGCAGAAGGACACCGCCGCCG 30704 28 100.0 33 ............................ TTGACCGAATTCGCGCTGGTTTTCGATGTTCGG 30643 28 100.0 33 ............................ TACTAAAGGATGCAATATCTAAAATGAAAAAAA 30582 28 100.0 33 ............................ TATCAACTTTTTCTATTGCTAATAGGCGGTCAT 30521 28 100.0 33 ............................ TGAAGATCGGGATGTATGGATTCCAGTGATTCA 30460 28 100.0 33 ............................ CAACGACGAAATCACCATCCTGACGACCGGGCG 30399 28 100.0 33 ............................ TTCCCGTATCGCTACATCGTCGCGCAAAAGAGA 30338 28 100.0 33 ............................ TATAAAGGGGGTATGCAAAACAGACCCCCATCG 30277 28 100.0 33 ............................ CGCCGGGCGGTGATTATGAGTCACTACCTGTAC 30216 28 100.0 33 ............................ TGCCACCATCCAGACCTGGAGCCATGCGTTGTT 30155 28 100.0 33 ............................ CGAGGAGGTAACCTGTGCGCTGATTGGGACCGA 30094 28 100.0 33 ............................ TCTCTGACAGGTTGCTTGTTATTTTTAGATAGG 30033 28 100.0 33 ............................ TAGATTTTTCGACAGCCTGCCGGGTCCGAATTT 29972 28 100.0 33 ............................ TAGCTGGTTTCGTCGTCTCCGCCGTCGCCGTCA 29911 28 100.0 33 ............................ TTATTGGACGGAGATTTCTGCACCGATTAACGT 29850 28 100.0 33 ............................ CTTGAGCGACCTCGATTCATTGCTGATAGTGGA 29789 28 100.0 33 ............................ TATGCGAATGCTTGGACAACCGTTAGCAACAAG 29728 28 100.0 34 ............................ CATTACCGGGTGTAATCAGTCACCTGCTGCTATG 29666 28 100.0 33 ............................ TTTTGGCATTGGGCTGGGTTCGTTTCTGCAGGG 29605 28 100.0 33 ............................ CAATGCCGGCTGCATTTTCCCGGGCGAACCCTT 29544 28 100.0 33 ............................ CTTGGCGGTAGCTCGCCCATCAGCTGCTTTTTC 29483 28 100.0 33 ............................ TTGCCGAGTCAACCACGATAACGCCGTGGTCGT 29422 28 100.0 33 ............................ TCATCTCTGATACTTGGAAAATCGGCCAGGATT 29361 28 100.0 33 ............................ CGAAAATGCAGCGAACCCGGACACGGCCAGTGC 29300 28 92.9 0 ..............T............G | ========== ====== ====== ====== ============================ ================================== ================== 50 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAACCGTTGTGCATTGATCTGGCCTTTTCTCTCTCACGAGAAATGGCTGGCCATTATGATAAACACAAAGTATCTGACGCATTCAGGAAGCGAGTTATTGCCATTGATTTGCTTAATCAAATCACCGCAGATGTTAATGAGTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACCTACCACCTGCGGTTCGTGGGCGTATGAAACTCTGGTTCGTGGAGCCTCGCCCGAATGTGTTTGTCTCTGGTGTAAAAGACTCCGTAGCACAAACCGTGGTTGATTACTTGATGCAGTATTCACCAGCAGAGTCCGGTCTTATGCTGTTTCGAAGTATTCCACAACCGCCAGGTTACGAAATTCGTTACAAAGGCGAGATAAGAAAGCCAATTACTCATATCAGTGGATTGCAACTGATTATCGAAACCCTGAAATCCCTGTAACCCACAGATATAGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : TTTGCCACGGGCCAGACGCGTCCCGTAGTTTGATTGTCTCCCCCACTCGATTTTGGAATACCCCAACTCATTTCATTCAGCCACCGCACTACGGTGGCATTTTTCGGGTATAGCCTGGCTTTAATCGCCGTTAACGTCTTTTCCCTGTCGTTGCGGCGTCACGCGCCGATAGCGCGACGGCCAGATTTCTTGCGGTGTTTTCTCTACTGCCTGCGCAATCAATCTTTCCCCTTTCGGCCAATGCCGGGATAACGCATTCGCCAGCGTTGACGAGGCCAGCCCATGCTGGCGTGATAGTGCCGCCAGCGTGGTTCCCCGTTTTCTTAATGCGGCAATGATATCTGCCGGATGCCAGTCACCTGTTTCCATTACTGCTCTCCTTTTGCTCGCAACCAAATATCCCATTTTGGGATATATCGAAACATGACAGATATTCGATTTTAGGATATTCGTCAAGAGCATCATGTTATGGCATCAACTTATTCAGCCGAGTACCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 992-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYH01000109.1 Dickeya chrysanthemi strain L11 contig_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 991 28 100.0 32 ............................ GGCGCGAATGGGGATGCTGACGCTATCGTGCG 931 28 100.0 32 ............................ AATTATTTTCAGCGGTGGATGCAAGTCTAAGG 871 28 100.0 32 ............................ ACGCCGAACCATCCCCAAGTGGGTTCCCGGTT 811 28 100.0 32 ............................ TCTATGACATAACGAGAAACCGCCTCTTGAGT 751 28 100.0 33 ............................ CCGCACCGGCAGTGGTTGGTCCGTCATACGCAC 690 28 100.0 32 ............................ TCTGCGATGTGGCGCAAGTCTGGCGCCGTTGG 630 28 100.0 32 ............................ TCTACCGTTATCTTTTCATCGAGCATCTTGCC 570 28 100.0 32 ............................ ACTTACGAAAGATGGCTGAAAATGATTGCATA 510 28 100.0 32 ............................ ATCACCCGACCTGGCTGGAGCAATGAAGGGGT 450 28 100.0 32 ............................ AGAGAACTCAATGGCATTAGCTCCGCCACTTG 390 28 100.0 32 ............................ AAAAAAGACAAGTCAGTGAACACATTTGGCGC 330 28 100.0 32 ............................ TTGAATACGGCGTTGATGACGTCGATTTCGAT 270 28 100.0 33 ............................ CTTTCACGGCATCAACTGCCTTTCCGGCGGCGG 209 28 100.0 33 ............................ CTGAAATTACTGGCGGCCGGTTGACGTTGCTAA 148 28 100.0 32 ............................ TGGCTGCATCAGCCAGTTCACATCTGATACCG 88 28 100.0 32 ............................ AAATACCGCGTTCAGGATGGCCGCCTCGACCT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCCATCGGCGCGCAGCGAGGTATACGGCTTGTAATCGCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGCCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTGCACGCCTGTCTGGCAAAAGCGCCACTGTAGCACGCTGTTTCCGCCGATGCCGGTTTTGACCCTTTTTTTTCACTCTGTTATAACTCATTGATTTTTAATGACGATAAAGAACGGTTCAACAAAAGGGTTTCGCAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2271-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYH01000073.1 Dickeya chrysanthemi strain L11 contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2270 28 100.0 32 ............................ ATTTAGCATTAGATCAAAAGACGTCCATGAAT 2210 28 100.0 32 ............................ GGCAGACTGGTGATGCCGGTGCAGCCCTGCAG 2150 28 100.0 32 ............................ ATGCGAATAAAGAGAAAAACAAAAGCAATGTG 2090 28 100.0 32 ............................ AAGCTGAAAAAAGCCACCGTTGATATGGCATT 2030 28 100.0 32 ............................ GGCAGGCTGACATACTCGAATTGAAAAAAGGC 1970 28 100.0 32 ............................ TAATTTTTATTGAATAACATGGTTGGCTTCAA 1910 28 100.0 32 ............................ AGTGATAGCCGTCGTCTTTATTGACGAAAATC 1850 28 100.0 32 ............................ GCAGCCGGATGAAGATGGACTGGCAAAAATAA 1790 28 100.0 32 ............................ GCTATGAGAAACATAGAAGATCGCACCAGCGC 1730 28 100.0 32 ............................ ACCCCGTCTCTTGATGTCCTGGCGGATGAATT 1670 28 100.0 32 ............................ CCATCATTTTCGATGTTAAAACCGGAGTTAAA 1610 28 100.0 32 ............................ AAGGCGCTGTGGCCAAATACAAAGGGGATAGC 1550 28 100.0 32 ............................ AGCCGGGCGACGGAGAATATGTGGTCACCGTA 1490 28 100.0 32 ............................ AGTCATTGCCCATACATGCCTGTCAGACTGTT 1430 28 100.0 32 ............................ ATGGGTAGTAACACACAGGCGCCAATCGTTGC 1370 28 100.0 32 ............................ AACAGTCAGCCAGCATTTGTCAATTGTCCGGT 1310 28 100.0 32 ............................ GCCATAAGCGCGGGATTGTGTGTCTAATGTAA 1250 28 100.0 32 ............................ GGAAAAAATCAGCCTTGCGATCGCCCCGTTCC 1190 28 100.0 32 ............................ GGAACGTGATCGCATCCGGGCGCTGGGAGGTC 1130 28 100.0 32 ............................ GAGTGCGATTTACGGCAAAGCCCATCGACTAC 1070 28 100.0 33 ............................ CGAACGAGGGTTCATTCTCGTCCGCACTTTCAG 1009 28 100.0 32 ............................ AATAAAGGCAGCGTTGCGATACCCGCGTGCGA 949 28 100.0 32 ............................ GCGTCGTGGCCAGGCATCAGAGGTGCGTGGGC 889 28 100.0 32 ............................ GCGGTGCCAAATTCACTGCCGCTGAAAAACCC 829 28 100.0 32 ............................ GCTGTCGCTGACACGTTTTGGCGCTACCAGGC 769 28 100.0 32 ............................ ACCAAACTGGTGGCAGAGCGCAGCCCGACGCT 709 28 100.0 32 ............................ TTGATGCCCGCATACAGCTCGCGGGCATCGGC 649 28 100.0 32 ............................ TCATGGCCAACCACATGGACTACACCAACGTG 589 28 100.0 32 ............................ GCTTTTAGGCGAGGCTTGGTATCTTTGGGAAA 529 28 100.0 33 ............................ CAAGTTTGCGATATATTTTGCATTATGCAAGAG 468 28 100.0 32 ............................ GACGATAGCCGTCGATACAGTGGTGATAGTGC 408 28 100.0 32 ............................ AAGATTGGCAGCGCCATGTCCATCATTAAGAA 348 28 100.0 32 ............................ TGACAGGTCACGCACAGCGAGACACCCGGCAG 288 28 100.0 32 ............................ GCTATCCGGCGCGCAGAGCTGATGGCCCGTAT 228 28 100.0 32 ............................ TGCAGTGATTGCGATGGTATTTCCGTCCTGTA 168 28 100.0 32 ............................ TTTCCCAATTATGAGACCCGGCTCTAGTTTGA 108 28 100.0 32 ............................ ACCGGCGTATTCAGTGTGACGCTGACCGAGGC 48 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.9 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCGCTGGCGGCGCTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGCACTGCCGGTGCCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCCGAGCGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGAGGATGAAGCCGATGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCATATCTGCCGCTGCGCAGCCTTTCCAGCGGACAACCGTTTTTACTGTTTGTCGAACACGGCCCGCTGCAGGACAAACCGGTCGCCGGTACATTCTCCAGCTACGGCTTAAGCGCCATCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGGAAAACGGCGATTTATCTTTAACAATCAGGTAATAAGTGATTATTCGCTACA # Right flank : TGGACTGACCCCACAACAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11237-13007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSYH01000073.1 Dickeya chrysanthemi strain L11 contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11237 28 100.0 32 ............................ TCAGCAGTATTATGGCTGACGTGCAATTTTGG 11297 28 100.0 32 ............................ ATGAATGAGCGCGGGCGTTCAAGTCGCACATT 11357 28 100.0 32 ............................ TTCTGAGCTTAAACCTCATGATGTTCTTTGTG 11417 28 100.0 32 ............................ GCTGCGGTGTCCGAGGTACACAGCGTAACGGT 11477 28 100.0 32 ............................ GTATCCAAGACAAACGGCACGGCGTTCGCATC 11537 28 100.0 32 ............................ TTAGTATCAAAAACACTCTCGCCATCGAGCAC 11597 28 100.0 32 ............................ TACTTCATCGACCGAACCCACCCCTTGTCTGA 11657 28 100.0 32 ............................ CGCACCTGTCTGCGCCGGTTGTAGTAATGGTT 11717 28 100.0 32 ............................ AGATTCGAGGATGCCAGTGCTGTCATTGCCTT 11777 28 100.0 32 ............................ GTCTACCCGTTTCAAGGTGATAGTGAACTCAA 11837 28 100.0 32 ............................ TCATCAACTTCAAGGGCGTGGGCCAACTGGCG 11897 28 100.0 32 ............................ GACATCTCTTTCAGAAATCATCTCCAAATAAA 11957 28 100.0 33 ............................ CCCAAACTCGCTGGCTGTGACAAATGTTGATAT 12018 28 100.0 32 ............................ ATCGGCAGATACGGACGTGCTGGTAGTTCGAC 12078 28 100.0 32 ............................ TGCAATTACAGGTCATCGGTATCAGTGACGCC 12138 28 100.0 32 ............................ GCAATCCAAGGCCGACGAGCTGTTCAGTCGCT 12198 28 100.0 32 ............................ CAGCGCAAATGACTGATGTTGTCACCCAGTTA 12258 28 96.4 32 ..................G......... AGTCAGGACGTTTAAATTCACGAGCCAGACGC 12318 28 100.0 33 ............................ TGTTAATACAGCAGCAGTGACAGGAAGCGTTAT 12379 28 100.0 32 ............................ GACAGCCTGACATCGATACACGAAGAAGAACA 12439 28 100.0 32 ............................ GATGTACGGACCAATTGCAACATCATGCTAGC 12499 28 100.0 32 ............................ TGCGCATATGCGCTCGCGTCCGCGGGTGGGGC 12559 28 100.0 32 ............................ TAAACCTGAATATCGAACTATTTTTATAGTCC 12619 28 96.4 32 ...........................G TGACACCGACACATTGTCAAAACGCCAGTTAG 12679 28 96.4 32 ...........................G TTTTATCGTGTAGGTAAATTGCGTCTGTGGAC 12739 28 100.0 32 ............................ AGTTGGCCGCCAATTACAACGTTGAGCGCCTG 12799 28 100.0 32 ............................ AGTATTCCGCCCGGGGATTTTACTAATGATAA 12859 28 100.0 32 ............................ GCAGCTGGGGCAAAATTACCTTGGCGTCAGAA 12919 28 100.0 32 ............................ CTGATTCTGTTTGCCCGCGCGACCTGTGGGCT 12979 27 82.1 0 ...........A.C.........-..CG | GG [13000] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGTCCGCCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTGATTGGAAAACGCGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCCAAAATACTTTTCTTATTTTTATACCCTTTTTTCCGCCGCTATTTTCGATACTGAAAAATCAATCAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGACAATTGCGAGCTGAAATACAACGGGTTAGAGTCAACAGGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGTTGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCACGTCACAGGCGGTCCGAGCAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCAGCAAAGAAACCATGCAGTTAATCACGCACGAAACCCTCCACCACACCACCCTATACACTACGCCCTTAATTCAACAGCGCTTTCCCCGCTTCGGGGATATCCTGTCAGAACGACGTCCAGTCGCTATTGCCGATGGCGGCGGCCCGCCTTTCAGTCGCGGCCGGGCGAACCGGCAGCGCCGGAGATAGCACCGCTGACTGACGGGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //