Array 1 1384507-1388865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014360.1 Methylomonas sp. DH-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1384507 29 100.0 32 ............................. TTAATACTGGAAGAAGGCGACAAAGTTAATAC 1384568 29 100.0 32 ............................. GCCGATTATCCAAGGTATTGGACAGATGGAGG 1384629 29 100.0 32 ............................. GTTGGGGTTTAGATGGAATACCGTATGAACCA 1384690 29 100.0 32 ............................. CCATTCAATATCCGCTGCTGCTCGTCTTCAGT 1384751 29 100.0 32 ............................. TATGGGAATTTGGCAGTCTGCGTGACGCAGTG 1384812 29 100.0 32 ............................. ACGATTAGCGGCATCTTCCAAAAACTGCGTAA 1384873 29 100.0 32 ............................. ACGGTTGCACATGTGGTTTAGCCAATTTTTCG 1384934 29 100.0 32 ............................. GAAAACCCTGATTTTGATGGCAGTTGGAATGA 1384995 29 100.0 33 ............................. TACAACCAAATCATAACCCCTCCAGTGCCAGAT 1385057 29 96.6 32 ............................C TCCTTGGGCGAGACGCGGCCGGCGGCGATAGG 1385118 29 100.0 32 ............................. GCCGACATTGACACGGCTGAAGTCATTCAAGG 1385179 29 100.0 32 ............................. CCGGTACAAAGCAAGCGCGGGGCGTTGTTGGG 1385240 29 100.0 32 ............................. TGATGGATCAAACCGAGCTGCCAACCAGCTTT 1385301 29 100.0 32 ............................. AATTTCGCGATTTGGTGCAGGATTCGGATAAC 1385362 29 100.0 32 ............................. CAGAGCAGCAAGAAGAAATCGCGCAGGAAAAG 1385423 29 100.0 32 ............................. AGAGAGAGGGTACGATGGTTGATGGCAAGAAA 1385484 29 100.0 33 ............................. CGATCCGTTACATCGGGCGCCTGGAAGCGTCAA 1385546 29 100.0 32 ............................. CCTTCCATCGGCCCGCATAACAGCAAAATCAG 1385607 29 100.0 32 ............................. ACCATCTTAGGAGTCGCAACAGTGACAGCAAC 1385668 29 100.0 32 ............................. ATTTTCTTCGCACTATCCACCTTAGCTTTCTT 1385729 29 100.0 32 ............................. ACTTATACCGTTATGAAAAAAATTAAGTCACA 1385790 29 96.6 32 ............................T GGCTTACCGACAACGGGACGCCCGCCGATTTT 1385851 29 100.0 32 ............................. GTTCGGTAAAAGATGACGCCACAAGAAGAGCT 1385912 29 100.0 32 ............................. TATTTGGATATATGGAGCAATGCAGCAACGGC 1385973 29 100.0 32 ............................. AAGACCCAATGACGCCTTTACGTTACATGAAT 1386034 29 100.0 32 ............................. TCGGGCCAGTTAATCATGCCAATAATGGCGAT 1386095 29 100.0 32 ............................. GCTTTAGATTCTTTGTTTCAGCCTGAATTCCA 1386156 29 100.0 32 ............................. CCTATCTTCATCTGGTCTATAGGCTTACTGGC 1386217 29 100.0 32 ............................. GCGTCTATGCCGGCGGCGAAAGCGCATTGAAG 1386278 29 100.0 32 ............................. GTAGGCGCAAATGAGCGATCAAAACAGAGTGC 1386339 29 100.0 32 ............................. CACTGTGTCTGCCTTACTTTGAATAGACTGAT 1386400 29 100.0 32 ............................. TCTTGATTCCGGCGACCGTTTCATTGCCAGTA 1386461 29 100.0 32 ............................. AATGTATCCATAGGGGCGCACCATGCCAAGAA 1386522 29 96.6 32 ............................A GTTTCGAGATTGACCGGGGCGAGCAGGGGCAC 1386583 29 100.0 32 ............................. ACAAATGCCCACAGTGCAGCCGTGGCATGGCG 1386644 29 100.0 32 ............................. AATTCCGGCCTTACAAGTCCATGATTGACGGG 1386705 29 100.0 32 ............................. ACGTGAATCTTGGCGGGCAAATCGATAACCCA 1386766 29 100.0 32 ............................. CAATGCGGCGATTGGCAAATGCAGGTCTGATA 1386827 29 100.0 32 ............................. ACCAATACTCGCCGAAAATAACGGATGGCAGC 1386888 29 100.0 33 ............................. GATGATATTTGCCTGAATCGCGCCGCTGTTGCC 1386950 29 96.6 32 ............................A TGGGCTAGGCGACTTTGTTAACGGGGGCCGCT 1387011 29 100.0 32 ............................. CTAGTCCAGAAATAGGCCAAGATTGTGTATTA 1387072 29 100.0 32 ............................. CGCAAATACGGCCGTGACAACTGGCAGCAGGT 1387133 29 100.0 32 ............................. CCAGTCAGCTTATTAACCGTTTGATTTCGCAC 1387194 29 100.0 33 ............................. GCGCAGCAAGATGCCCAGATGAAACAAGCCGAG 1387256 29 100.0 26 ............................. AAAGAGATAGCCGGCAGCGGCTACGT 1387311 29 100.0 32 ............................. TCTCCCGTCGCTGGAAAGACAAAAATCCCGTC 1387372 29 100.0 32 ............................. AGCACGTCAATCCGGCGACCGCATCCGGACAC 1387433 29 100.0 32 ............................. GGAGTCGTGGCTCTGGCGAAGGCTCTTACAAT 1387494 29 100.0 32 ............................. CTTTCGGTCAGCCCCTGACGCACGTCGTTTTG 1387555 29 100.0 32 ............................. GGACGTTCAGGTAAGTAATTTTTTTTGCCTTG 1387616 29 96.6 32 ............................C TCAGCGCTTTCGCTGACTTCGTGATTGATTAT 1387677 29 100.0 32 ............................. CCTGATTTAATCGCGTTGCCACTGCGCGGCCT 1387738 29 100.0 32 ............................. AGTTCAATCAATCAATTAAGGAGACCTCGTAA 1387799 29 100.0 32 ............................. ATTTACCGCTATAGTGGTGCGGCATGGGAGCT 1387860 29 100.0 32 ............................. CCCGGTACCGGCAGAGTTTCGTAACGGTAGCC 1387921 29 100.0 32 ............................. CCGCCGACTACAGTCGTCATTGCCTGGAGAGC 1387982 29 100.0 32 ............................. TCGAGGTAGAACATGGCAGAACAATTTGCAAG 1388043 29 100.0 32 ............................. GCAAAGTCAAATGAGCAGCGAAGCCGACGTGT 1388104 29 100.0 32 ............................. TCTTCGACCAATTGCCGGCGCAGTTCGCGCAG 1388165 29 100.0 32 ............................. CCTGATCAAACTCATGGCCCGCACCGTGGCCG 1388226 29 100.0 32 ............................. ATCGAGCAACAGCGCAACCGCAGCAACGTCGG 1388287 29 100.0 32 ............................. GCCGTACGGCCGCTGGATTTAAGGGATGCCAT 1388348 29 100.0 33 ............................. CTAACTAGGATCGATCTCGCGCACGACGACTAC 1388410 29 96.6 32 .....T....................... GCGAGGTCGACACGCTGCACCGCGAGTACGAA 1388471 29 100.0 32 ............................. CGGCAGCGTTTGACGTGTCGTCAATTGATCCC 1388532 29 100.0 32 ............................. AACACAAATCAACCGCAATCTCCCAATTACGA 1388593 29 100.0 32 ............................. CATAGCATCAACCGCTAGCTGAACCTGCCCAG 1388654 29 100.0 32 ............................. CCTGGATGGCTAGATAAAAATGGACTTCCCCG 1388715 29 93.1 32 ..................A.......T.. TGATGGAAGAAGCGGCATTGGCCGCATTCAGA 1388776 29 100.0 32 ............................. TCGGATTTCATCGCCTTGGTGATTTCGACGAT 1388837 29 82.8 0 ........................CTTAT | ========== ====== ====== ====== ============================= ================================= ================== 72 29 99.4 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : AAGGTGCGGGACATGATCTGGTCGCAAGTCGAGCAGGGCTTGGAGGAGGGCAACGCCGTGATGGTCTGGAGTACCAACACCGAATCCGGCTTTGATTTTATGACTTTAGGAAAGAACAGACGGCTGCCGGTGGAATTGGACGGCTTGAAACTGGTGTCATTTTTTCCGCCGGAAGATGCCGATTCGACGTCCTCGCCCTCAGGGCACGGGCCGGGGTGAGGGGAGAAATGCGCACTATTAACCCCGACCCTTAACTATACCGTTCGCCTTTATGCCCCTCGGGTACTGAGCCCGTCGAAGGGCACAGCAGCTTGGGCTTCGACCCGCTCAGCCCGAACGGAATACCCGTGATAAACGGGGTTGGGTTAATAGACACCTGGTGGCATATAGAGCGCTGTAAGATGTTGCGCCCGCTTTTTAACAACTTGGAAAACACCGAAAAATTCGGTAGAAAATTCGACCGGTTGTTTCCGTTTATCTAACAATAAGTTAGCATTAGT # Right flank : TAAAATCTCCCCCAGCCCCTCTTTTTCAAAGAGGGGAGCTTGGCAATGTTGGCTTACCGGAATTGACCCGCGTTGCAGGGACGAGCGGTCGTTGCCGATGCCGGTCGGCGCTTGCCGGCGCGTTTTCGGCGGCACAGTCCGGTGGCGGGCAGCCGTTGGCTAGTTTCGAGATTGACCGGGGCGAGCAGGGGCACTTACTATCTGCACTCCCGCCACACCGCCGGACGTAGCTATGGGTCAAGAAATCCGCGCCGCCACGTATCAAGAAGCCGATTTTCAGCGGTTTTGCCAGCGTTTACAGGCGGAAACCGAGTTGCTGGGCAGATTGGTCGCCGCTAAAGCTTGTTCCGAAGCCGAGCCGGTGGCCGGCTTCGAAATCGAAGCCTGGCTGCTGGACGCGCAAATGCGGCCGGCGCCGGCTAACCAGGAATTTTTGCAATCTTTCGGCCAGCCGCTGGCCGGCCCGGAGCTGGCGAAATTCAATATCGAACTGAACACGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2009909-2015101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014360.1 Methylomonas sp. DH-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2009909 28 100.0 32 ............................ ACAGACAGCTCTGGTACGTCGGCCAAAGATAT 2009969 28 100.0 32 ............................ TATGGCGGCCTCGCAGTGGAAAAAGCGAGGCC 2010029 28 100.0 32 ............................ GGCAACCTCGCCCTGTTGCCGGCGATGTCCAG 2010089 28 100.0 32 ............................ GGTCGCAAAAACCGCGCGAACGCCGCCGGATC 2010149 28 100.0 32 ............................ TACCAGCGCACAGACAGCAAAAATCTGGCAAA 2010209 28 100.0 32 ............................ AGCGATCTGTTGTCCATCGATAACTCCTATGC 2010269 28 100.0 31 ............................ AAATCCAGCAGGCCGCGATATTCGCCGCTAG 2010328 28 100.0 32 ............................ TCCGCCTTAGCACGGAATTTATCCAGCGACTC 2010388 28 100.0 32 ............................ GTCACGTAAAACAAAAGGTTTGCTGATTTTTG 2010448 28 100.0 32 ............................ ATTTTCAAGCCAAGAGAGGATAACCATGGACA 2010508 28 100.0 32 ............................ CAACAAACGAGGTAGTGTCTATTGCTTGTAAC 2010568 28 100.0 32 ............................ TCCCGAATCAAATCGGCTGACAATTTATCGAA 2010628 28 100.0 32 ............................ TTCACGCTCACGGCCGGCAGCAACAGTGCCAT 2010688 28 100.0 32 ............................ AGAAAGCCATCCATGCCGGCAAATTGAAGGCC 2010748 28 100.0 32 ............................ GCAACACCCAAGGCGCCGCCAATAAGCTTTTT 2010808 27 96.4 0 ...........................- - Deletion [2010834] 2010835 27 64.3 6 A...........-..ACG.CTAC..C.. CGGCGA Deletion [2010868] 2010868 28 100.0 32 ............................ AGTCACGTTCGTCCAGCTCTTTTCTGGCATTG 2010928 28 100.0 32 ............................ AATTGAATGACGATTGGCGTAAATGGAGGAGT 2010988 28 100.0 32 ............................ GTGGCGGGCGAGCACAGTGCGGTGCATGTCGT 2011048 28 100.0 32 ............................ AGATCAGGCGCGACTCGGTCCCACACTTTCGA 2011108 28 100.0 32 ............................ ACAAACTACTCTACATTTTCCGCCGGCAGCGC 2011168 28 100.0 32 ............................ CACGGATCGGCATCGCCAGCCCCGCAATTGTT 2011228 28 100.0 33 ............................ CTTTATTGACGCATCGTTGCAACTACTTGGCAA 2011289 28 100.0 33 ............................ CATACGCGCATGGTGACAAACCAGCGAATCCGG 2011350 28 100.0 32 ............................ GGAGACTACCGATATGGCTACCCCGCAAGAAG 2011410 28 100.0 32 ............................ TGGTGCAGGATGGTCAGGAAATGTCCGGCATC 2011470 28 100.0 32 ............................ AACTGGATCGGCCGCGAAGCCACCGTCGAGGA 2011530 28 100.0 33 ............................ AAACCCCTTGCCGCACTCCACGGCCCGCTGCCC 2011591 28 100.0 32 ............................ TCGACCAGTTCGAACAGCGTCGCCTGGTCCGT 2011651 28 100.0 33 ............................ TCAAAGAGATATCGATTGTTGACGTGCCGTCAA 2011712 28 100.0 32 ............................ AGTTAGCTATTTCATCCGGATGCACGTCGGCA 2011772 28 100.0 32 ............................ TTATAAAAATCAATCGCTTCGGTAAATGGCAA 2011832 28 100.0 33 ............................ TTGCCGCTGCCGAAGCAATATCGGCAACTCGAT 2011893 28 100.0 32 ............................ GTCGTGCGATGGGTCAGGGATAAAGGCGTTGT 2011953 28 100.0 32 ............................ TGTGCGCAAATGCGATATACGACGCCTCGATC 2012013 28 100.0 32 ............................ ACCCTGACATATACGAAACCCTATTGGATGCC 2012073 28 100.0 32 ............................ AAGAAACGCCCGCGCCGGCAGATTGGTTTCCC 2012133 28 100.0 32 ............................ TGAAAGCGCAATGCCCGCTGCTGGAAAACCGC 2012193 28 100.0 32 ............................ ATGTTGCTCGGGATAGTCAGCGTGGCCGTGTT 2012253 28 100.0 32 ............................ TCGCTGGTGTCCACCGTCGGCTCGCCGTGGTT 2012313 28 100.0 32 ............................ ACGCAGGTCCGCGACTCCGCGGCCATCACCAG 2012373 28 100.0 32 ............................ ACAGCGATATGCCGGTCGTTGAGTTGCGCACG 2012433 28 100.0 32 ............................ GCTAACCGCGAACACCGCATCATCGCAACCAA 2012493 28 100.0 32 ............................ TTGCTGATTACGGCCCGCCAAAACTTGTCGAT 2012553 28 100.0 32 ............................ TTCGTCCAACGTAATCTGGCCGCCGCTAACCA 2012613 28 100.0 32 ............................ TTCCCAGGCCGGATCGCAGGACAACACCACCG 2012673 28 100.0 32 ............................ GGCCAGCGTCGGGACCAGCGAGATCCGGTTCA 2012733 28 100.0 32 ............................ TTGATTGATGCCTGGGCCAGTCATCCTGATTT 2012793 28 100.0 32 ............................ ACATGGGCAGCCGGGCCATTTTCCGGTTCGAA 2012853 28 100.0 32 ............................ TGTAGTGCTACGTCTCGCGGAACGAATTTACC 2012913 28 100.0 32 ............................ GCAAAAACCGACGGCCCTCCGGCAACTGCAAC 2012973 28 100.0 32 ............................ GCAATGGTTCCTCGGTTGCCGGCGCGGTTTCT 2013033 28 100.0 32 ............................ AGGCGATAAATACGCAAAAATTCACGACAAAA 2013093 28 100.0 32 ............................ AGCGACTGGACTGCTGTTGGCTCACCGGATTG 2013153 28 100.0 32 ............................ AATATGAAACAGAAGTAGGAGATCCTTATGTC 2013213 28 100.0 32 ............................ TGACGTGTGGATTGATGCCAAATTGGACCTGA 2013273 28 100.0 32 ............................ GACATGGCCGACAAAAAAGCACTGGAAGAACT 2013333 28 100.0 32 ............................ GGATATCGGCGGCAGCAAACTAGAAGATAACC 2013393 28 100.0 32 ............................ AACAGGCGCGGATCGACCGCCAGCTTATCGGC 2013453 28 100.0 32 ............................ GAATAACGCGACCCGGATAAACATGGTTTTTT 2013513 28 100.0 32 ............................ ATAGGTTGATGGGTGGCAGGGTGAAATCTCGC 2013573 28 100.0 32 ............................ AGTTTATCGAACCGGCCCGTTGCCGTTTCGTT 2013633 28 100.0 32 ............................ GAAAACGCTTGGCGAGCAGTGGTATCCTTTTT 2013693 28 100.0 32 ............................ GAAATCGTGCCCTTTTTCTTTTGCAAGAATGG 2013753 28 100.0 32 ............................ TTGGTTGAAATAATCGTCGCTCGATTTAGTTG 2013813 28 100.0 32 ............................ ATTGCCTCTTGATATGCGTCAATCAGCGCATT 2013873 28 100.0 32 ............................ GGTCGCGGCTAAGCGGCCATGTCGGCATTCCG 2013933 28 100.0 33 ............................ CGCGCGGCTAATGGCAGCGTTTGACACGTTATC 2013994 28 100.0 32 ............................ TCGATCGAGCATCCGCGTTTGGAGCATAAGGC 2014054 28 100.0 32 ............................ TCACCACGGCACTCGTTAGGATTACCTTTAGT 2014114 28 100.0 32 ............................ AAACGTGGCGTGCCATCCCATGACGGCAACGA 2014174 28 100.0 32 ............................ GCGGGAGTTATACTGCGAATTTGGTAACGTTA 2014234 28 100.0 32 ............................ AACGTCACGTCATCCGGAGCTAATGGCATCGA 2014294 28 100.0 32 ............................ TTGCGATAAAGGTTTGGTATGGAGCGCAGGTC 2014354 28 100.0 32 ............................ AAGCTCGGGATTTCGGCAAAAGACCCGCTCGA 2014414 28 100.0 32 ............................ ATGCTGTTGGCATCGGCGCTTAGTGGCTCGAT 2014474 28 100.0 32 ............................ AAGCAGACGAACGCTTGCTATTGCGTAAATCT 2014534 28 100.0 32 ............................ TACGCCCTGCACGGCAGCGAGACGGACAACGA 2014594 28 100.0 32 ............................ TCGGTCATGTCCTTGTCGGTGCCGATGTAATA 2014654 28 100.0 32 ............................ TACACCATCCGCTTTCCGGAATCGGGTTACAA 2014714 28 100.0 32 ............................ AACAGCTTATCGCGCATGGCCGGCGAGAACTC 2014774 28 100.0 32 ............................ ACCGTTAACGATCACCTTCGGGCAATTGTTGA 2014834 28 100.0 32 ............................ AGATCAGGTTCCCAGTTCCGCCGGGTCGGTCC 2014894 28 100.0 32 ............................ AAACCCGCTTCCTCTCCAGCGCCTAACAATTC 2014954 28 100.0 32 ............................ GCAGCACTCGCCGGCCCGTGGTGGTTTTGGCT 2015014 28 100.0 32 ............................ GCTGAGATCCGCGACAAAATCGATCACGACAT 2015074 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 88 28 99.6 31 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : ATTGCACCGGCATCCGTCCGGTGCCGGACAAACTGTTGGGGTATGCGGTTTACCGGCGAGTGCAGCCGAAGACCAACCCGGAGCGCCTGGCTCGGCGCTATGCCAGACGCCACGGCGTGGACCTGGCGACCGCGCTGAACATGACGGTTGAATTGCGCGCGGCTGGCGAGAATCCGGCGTACCCGCTGTCGTTTCGCTATTGCGACATGCTCAAGCCTTCTGTCGCCTTGCCGTTCATCCGCTTGCAAAGCTTGAGTGGCGGCCAGACTTTTTGTTTGTGGATCAGCAAAACCGAGACGGTCGCGCCGGTGACCGGCAGTTTCAGCGCCTACGGCCTGAGCAGCATCGCGACCGTACCCGAATTTTGACCCAAAATTTTTTCGCTCTTTAACAATGTGAATTAAATCAGCCGGTTACGGTTAAGGCTTTTGCGGATGGTAAAAATGGGTCAAACCGCCCGCAACCCTTGTCGCGACCGGCTTCCCATTTATTTATAATCA # Right flank : ATGAAATCGAAGGATGCCGGGGTTAAATTGGCAGTGGAGTTTGACTACATCAAGAAAGGCAATCCGGCCGTCAATATGATCGTTTCCGGCTTTAGTCAGGCTACCAGAACCATTGAGGAAAAGATTCGAGGGGGATTTATCAGGCGGTGGAATGAGAGCGGGAGGCCGGCCGTCCCTCCATTCGTCTACTCTTACGAGTCACGCCACGTGGAAGCCGAATTTCCACGCCTCGCTCTCATCTGGCGATTATCATAGGTCGAGTCATGATTGAAGACAAAAAAAATAGGAAGCTCTATTTGGTGCCTTATCGGAATGTCCGCCGCCGCCAAAAGCGACGACGGCATGCTGTTAACGGAAGCGATCACGGAAACCTATTGGCAATTGCATTGCCAGCATTCCCGCGCCTGGAGCCACAAAATCGAGCTGCGCTCGTTCAAGGAGACTTTCCGAACGGCGCCGGCGGCAGGACTATTCCTCCTGGTCCCACAACACCGGAAACG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2613914-2610124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014360.1 Methylomonas sp. DH-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2613913 36 97.2 36 ..............T..................... ACCGCCACCGGCCGCTTGCAGGGCGCGAAAGAATTG 2613841 36 100.0 37 .................................... TATCTGTCATGTAAGCCCATCGCTGGCCGTTCATTTC 2613768 36 100.0 36 .................................... CAGCGATCGCCGCGCCAATAGCGGTGATGGCCAGCA 2613696 36 97.2 37 ..........................G......... CCTCTAATGCAGTTTTGCGGATAGTTTCGGCATGCAT 2613623 36 100.0 37 .................................... TCCCTGGGATTCGGAGCCGGTTTTGTACTCGCGAGCT 2613550 36 100.0 35 .................................... TTCGTGAACTGGATCAGGGTCGAGTTAGAGCTCAA 2613479 36 100.0 36 .................................... CGACAGAGTTAATAGAAGGATTGACCGCGCTTGGCT 2613407 36 100.0 35 .................................... GAGCCAATTGCACGTTGCTGAGCGTAGTCGCTGAG 2613336 36 100.0 36 .................................... GCCGGCCTTGATCGCTACCTCTTCACGACCTTCTTC 2613264 36 100.0 35 .................................... CGATTAGCCAGCTAGAAGAGGGCGCAGACATGGCA 2613193 36 100.0 35 .................................... CAGATTTTCACCGATGGTCTGGAATTGGTCGGAGA 2613122 36 100.0 38 .................................... CCCGACAGCCGGCGCATGGTAGTCAGCGCCTGGAATCC 2613048 36 100.0 37 .................................... TTAGCAATCACAGCGCAGCCAAAGCCGCGCAGTTCGC 2612975 36 100.0 36 .................................... CGTTGTTGTCGATCGGTTCGTAGTTCAGTGCGTGCA 2612903 36 100.0 36 .................................... GGGATCAATCAGGCGTTACGCCACCCAAGGCGTGAC 2612831 36 100.0 36 .................................... GGCCATGACACCTTGCCCGTCCTTGCCGAACCATAT 2612759 36 100.0 36 .................................... AAGCAGCGGTTTGAGTTGTTGGTTGATTCGGAAATT 2612687 36 100.0 37 .................................... GATGTTCGAGCGGTGCGTTTACGTGCGGGACGACCAT 2612614 36 100.0 35 .................................... CATCATCAGCAAAATACAGAAAAACATTACACCCT 2612543 36 100.0 36 .................................... AATTAATTTTATTTTTTATTGTTGGATTAGTCCATT 2612471 36 100.0 37 .................................... CCTTTCGCCACTGGCTTCTCCCGAAATCGTCGTGATT 2612398 36 100.0 37 .................................... CCTTTCGCCACTGGCTTCTCCCGAAATCGTCGTGATT 2612325 36 100.0 36 .................................... TTTTTTAACCTCTTCCCACGCCATCCATCGCGGTTC 2612253 36 100.0 37 .................................... AGCTTGACGTAACGTTTCGGCTCGCAACCGGCACGTT 2612180 36 100.0 36 .................................... TTTGCAGTAAAACTGCTGGATTTTGATCGCATTCCA 2612108 36 100.0 36 .................................... ACCAAGCGCAGATGGCGACCTTCGAATCGTTCCACC 2612036 36 100.0 36 .................................... TCCATGTGGGATACCTGCAATTTAGAATCGAGATTA 2611964 36 100.0 36 .................................... TGATGTTCTGGAGGGATACGGGGCTAAGCTACATTC 2611892 36 100.0 36 .................................... CTATACCAAGGGGGGCGGCCGTCGCCGGCGAAAGTT 2611820 36 100.0 36 .................................... TGTCGCCCCCATATACACGCCGCACTCGGCGCGCTT 2611748 36 100.0 37 .................................... TATACACGCCGCACTCGGCGCGCTTGGACAGGCCCCA 2611675 36 100.0 36 .................................... GTATATGGGGGCGACAGTTGTCTGGCGTAAATGGGT 2611603 36 100.0 38 .................................... CAGACGAATCTCACGATTCTCGGTGGTGGAAACACGTC 2611529 36 100.0 37 .................................... ATCTGGCCTTGGTCTCTATCGGCGAATTGGCGGTATT 2611456 36 100.0 35 .................................... GCGGCTAACAAAGTCTCGGTAAAGCCGCAGGCATT 2611385 36 100.0 37 .................................... TCGCTGCGGACATGTCCGGCGCGGTGGTGCCGCCGGT 2611312 36 100.0 36 .................................... TCAATGCGCCTTCTACACCCTGCTGATTCCACGCAA 2611240 36 100.0 37 .................................... TCCGAACGAAATCAGCTCGTTACAAAAAATCATGGTT 2611167 36 100.0 35 .................................... GAATTAGCCTTTTTAATACTAAACAGGCCGCCCCA 2611096 36 100.0 35 .................................... ACGACCATAAAAAGCACCTATAACAGCGACGTGAC 2611025 36 100.0 36 .................................... CATGACCAGCGGCGAATTTATCGACCACGTCAACCG 2610953 36 100.0 35 .................................... TTGGCGGCCAGCGCGATACCGTGCTGGTCACTTTG 2610882 36 100.0 37 .................................... AAATTGGCCGTTGTTATCCATTGAAACGCCCCCCGTT 2610809 36 100.0 35 .................................... CAATGCCCCAGCGTTACGATTTTGCGGAACAACCG 2610738 36 100.0 37 .................................... GATTAGGACAAGTATCTATAGTAGAGTTAGCATTATT 2610665 36 100.0 37 .................................... ACGATGAACGACACGATGAACAAAAATGTACAGTCTT 2610592 36 100.0 36 .................................... ATCTTGCCGTTGATATTCCATCTACCATCTTTTTTA 2610520 36 100.0 36 .................................... TGCTGCTGGCCTTCTGGTTTGTAATGATGAGATCAC 2610448 36 100.0 36 .................................... TGCGTATTGATAGCGTTGGTCGTGTGTGTGGTCACA 2610376 36 100.0 35 .................................... CAAGGCTTTGCCGAGCCTTGAAAGAGGCTGAAGAA 2610305 36 100.0 37 .................................... CCATGACCAAAAACCTCAATTCGTTCAAACGCCAACT 2610232 36 100.0 37 .................................... TGGGGCCTGTCCAAGCGCGCCGAGTGCGGCGTGTATA 2610159 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 53 36 99.9 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : ACTTGGCGGCCGTGGCGCTATTCGAAGCCGCCGCCGAGGTCGACAGCCTGCTGAAACAAAACCGATGCCCCGACCCCGGCCAATTGCAGCGAATGGACACTTTGTTGGCCGAATTGTTGGCCGAAATCGGCAATCTGCCCGCCGCCGGCCATTCCGCCGCGGCAGAGGCGAGCGTAACGGCCAAACCGCAGGCGGAAATGACCGCATTGCTGGAAAAATTGGCTGACGCCTTGGAACACGACCTGGGTGCGGCGGAGGATTTGATGGAACAAGTACGCGCAAGTCTGGCCGACAGCCATTATCAGGCTATCGTTGCCGAAATCGGCAACAAACTGGACCGCTTCGCAATCGACGAAGCCCAATCCCAACTGACCGAACTGCGCCGGCTGATCGCGCAAAGTTAGCCGGTTATTACATTGCTTTTCGTTATCGCTCCAAGAGTCTCTGGTGTGAGGCCGGGGGGGCATCGTCAACCGTGCAAGCGCAGCACTCCGAGCAAT # Right flank : AGCGCGGGCTGGAGGCCTTGATTGGCGCGGCCTGCGCGGGCCGTTTGCGAGGACTGCGTAAAACGGCCGGTCAACTTTAGCGGAAAAGCCTGCGCCGCGCCAATCCAAATAGCTAAGTTCCTGATTGTTAAAGAGCTGCCGGCTTGCGAGAGCTGCCAGACTTTTGCGCGGCACTGCAGCGCTCGCGTGGTGGCGGCAAGCACCGATTAACGTTCTCAGCCACCAGTTTAAACCGGTCAATTTTCGTTCCATTCTATTGTTGCCCTGCCAAGCTTTTGAAACATACACGGTAAACCGTAATAAAATCAGACCGTGGCGATAGGAGACAGGGCGACTGTACGCCAGACCCAACCAAACCCACGAGCCGGTTTTACAGTTTGAACCGGCCACATTTGAGTGGAGATCGGCCGACATTTTACTGATCTCCTCAACATCAGACGATCACCGGCTGCCGTTCCACCACTTCGAAATCCTTGCCCAAACTGACCACCGAGGGCTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 4 3609349-3608345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014360.1 Methylomonas sp. DH-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 3609348 36 100.0 34 .................................... TAACGCATATCAGAAAAAAGTAAAGTATTTTTTT 3609278 36 100.0 33 .................................... AATAAGTAACTGGGGTAGCGATACCAACAGTAG 3609209 36 100.0 33 .................................... CTTCCGGCTGCGATGCAAAATGATTCTTTCCAG 3609140 36 100.0 32 .................................... AATAAATCTTGAGGTATCCAAATGGATTCTTT 3609072 36 100.0 34 .................................... ATCCCACTTATGGATAACCGCCGGAGCAGCTTCC 3609002 36 100.0 32 .................................... TTCATATCTGTACAACCAGGGTGGTGCCTGAA 3608934 36 100.0 33 .................................... ACTTCTGGAACGACAAAACTACCGTCATCATAG 3608865 36 100.0 33 .................................... ATAGATATCCGTAAAGGTCAGTCTTTAGTATCG 3608796 36 100.0 34 .................................... CTAACACGCCGTAGTCGTCTCTGTAGCATAATGA 3608726 36 100.0 34 .................................... CTTTATAAAAGGCTTGGACCACATCACACCGTGT 3608656 36 100.0 32 .................................... CAATTACGCCATCTACTTCCTTAGTTTCTAGG 3608588 36 100.0 34 .................................... GTGTACCCTGTACCTCTTTCAGCAGATTTGAAAG 3608518 36 97.2 33 .....................T.............. TCGGCCATTTGCCGCATTATTTCGGCGTGTTTA 3608449 36 100.0 33 .................................... CGAATTGAGTTACCTCGGATAGCTTTGATTGTT 3608380 36 80.6 0 ...A...............T...........TTATA | ========== ====== ====== ====== ==================================== ================================== ================== 15 36 98.5 33 ATTGAATAACAGCCCTGTTCACGAAGGGATTAAGAC # Left flank : ACGATGCCGACGGCGCGCTATATCTTAGTGGCGGTTGGCTGGAGGAATACACCTGGCTTACCGCTAGCGAACTGGGCTGCGACGAGGTCTACGCCAATGTTTACTTCACCGAAACCGGTAATTCCCGCAACGACATCCGCAACGAAATCGATGGCCTGATCCTGCACAACAACCGCCTGTTAATGATCGAGTGCAAAACCAGCATATTCAACGCCGACAATGCCAAAAGCGACGGCATCGTGTATAAATTGGATACCCTGGAGCGACGCACCGGTGGATTATTCGGCGACGCCTGGCTGGTATCGGCTAGACGGCTGGACGATGCGACCCGGAATCGGGCACGGGAATATAAAATCAAAATCATTGAAGGAGGAGACATCAAAAACCTGAAAACACGCATTCAAGATTGGATGAACGGTAAATTTCAATCATGAGTGTGACACCGCTTGGGAACTGTCTGTATAACCCGCTGATTCCAAGCTATTTTTTGGCTGCAAGCC # Right flank : TAGTTTGTTTGTCGTCCTTTGCGGTACCAATTCAATACATCAATATAAAATTCCGCAGTCGAGCCGATTTTTAAGGTGTCTCGTGAGAAGGTTTACTCCCTCATAACAAATTTGTTGTTTGCCGCTTTTTCTTGCGGCTGTGTTGCAATCTGTTCCGAGTTAAGTAACGGAGAACGATATGCAAACCTTATTTCTTGAAAAAGCCGGCGCGGAATTGCGCTACGAACGTGCCTGTCTATTGCTTTACCAGGATGGCAAGGTGGTGGGTAGCGTGCCGCTGAAAGTGCTAGAACGGGTTGTGGTATCGCCGCAAGTGGCCCTGGCTGCCGGGGTATTGGGCGTGCTGAACGAACGCGGCATCGCTTTGTTAGTCATCAATCACCGCCACCCGGAACGTTCGGCCTACCTGAGTACGCCAATGCACGGCGATGTGCATCGGCGCATGCGTCAATATGCCTTGTATCTTGATAAGGATTTTCGCGCCCGTCAGGCGCTATGCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAACAGCCCTGTTCACGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //