Array 1 360-1347 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBD01000003.1 Pseudomonas aeruginosa strain MCF199 IPC1370_3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 360 28 100.0 32 ............................ AGGGGCCGGCCTCGCAAGGCTGACGCGCTCTC 420 28 100.0 32 ............................ TTGTACGGCCACCTTCGGACACCAGCACCACG 480 28 100.0 32 ............................ TGTCTACCCAGCGTATTGGCCATTCCGTTGGC 540 28 100.0 32 ............................ TCGGCCCGTCCAGAACGTCACACGCTCGCCGT 600 28 100.0 32 ............................ TCCAGGTAATCAGCGTACCACTGCATCATGAC 660 28 100.0 32 ............................ ATTTCCACTTCTGCTGCGGCCTGGGCGGCGGT 720 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 780 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 840 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 900 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 960 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 1020 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 1080 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 1140 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 1200 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 1260 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAGTACGCCAGCCGCCTGTTTCGGCAACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGCCGTCGGGGGAATTGCTGGGATAACTCGCCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAGGCCCAACGGGACATCAGTCATTACCTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGCTACCGCCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGACCACTACAGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 304-1772 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBD01000037.1 Pseudomonas aeruginosa strain MCF199 IPC1370_37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 304 28 100.0 32 ............................ ACCTCGCGCCCTGATCACCCAAGCGTGCGTAT 364 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 424 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 484 28 100.0 32 ............................ CGACCGAGGGGAGAGTCACCAGTCCGGAAAAT 544 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 604 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 664 28 100.0 32 ............................ AGTTCCCGCTGAGGCTGACCGGGAAATCTGCT 724 28 100.0 32 ............................ TTCACTGGCTGCGCATGCGCGGCGAGGTATCA 784 28 100.0 32 ............................ TGACCACGTTGATGCCCGGGTAGCTGCTAAAT 844 28 100.0 32 ............................ GTTTTGAACTCAGGATCGCTCTGCATCATCAT 904 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 964 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 1024 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 1084 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 1144 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 1204 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 1264 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 1325 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 1385 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 1445 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 1505 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 1565 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 1625 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 1685 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 1745 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATAGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACAGTCGGCG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11697-10653 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBD01000037.1 Pseudomonas aeruginosa strain MCF199 IPC1370_37.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11696 28 100.0 32 ............................ GAATGGGTCTGCCTCGGCGGGATCGACGTGGA 11636 28 100.0 32 ............................ CGAGTGCCGTCAACCGCTTGGACAACCTGCAT 11576 28 100.0 32 ............................ AGGCGGCGCAAAGTCGGCCAAGTCTTCACGCT 11516 28 100.0 32 ............................ TCAGCAGCAGGGAACCCGCGTGACCGTTGTTG 11456 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 11396 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 11336 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 11276 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 11216 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 11160 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 11100 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 11040 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10980 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10920 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 10860 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10800 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10740 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10680 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //