Array 1 4903-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFW01000023.1 Lacticaseibacillus paracasei strain FAM19317 FAM19317_scaffold_0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4902 28 100.0 33 ............................ CAAGATTGGGCCCATACCGTTAATGACTTTCAG 4841 28 100.0 33 ............................ CAAATGGTGTTTCTTTTGAGAAGTTCAATCCAG 4780 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 4719 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 4658 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 4597 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 4536 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 4475 28 100.0 33 ............................ TGACCATTATTTCATCTGGCCCCCACATTACTC 4414 28 100.0 33 ............................ TACCAACCACTTTTAGAATGCTGACAGCCCCCA 4353 28 100.0 33 ............................ TACCTGCGATATAAGGCGCGTATGCCATGAGGT 4292 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 4231 28 100.0 33 ............................ CGTCATTGTGAGAATGCTGGCGTTCCCATTATA 4170 28 100.0 33 ............................ CTTTAAAAACTAAGGAGAAAAATCATGAATAAA 4109 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 4048 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 3987 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 3926 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 3865 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 3804 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 3743 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 3682 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 3621 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 3560 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 3499 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 3438 28 100.0 33 ............................ TTGACCAACCACGTTGATCCGAAAACCCAGGGA 3377 28 100.0 33 ............................ CTGGTTCAGATGGATAGGTCCCAGCATTAGGCA 3316 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 3255 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 3193 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 3132 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 3071 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 3010 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 2949 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 2888 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 2827 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 2766 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 2705 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 2644 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 2583 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 2522 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 2461 28 100.0 33 ............................ CAAGCCATGAAAAAAGCCGCTGGCCCGCATGCC 2400 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 2339 28 100.0 34 ............................ CCTCTGCCCAGTCACCAATCGTGTATCCAAAAAA 2277 28 100.0 33 ............................ TGATCTTCGCAACCGTGAAGGGATTTCAATCAG 2216 28 100.0 33 ............................ CATTAGACGCCGGAACAGGCTGTGAATTTGTTG 2155 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 2094 28 100.0 33 ............................ TACGCTTGCTGGTATGGCTCACCAGCAGGAGTA 2033 28 100.0 33 ............................ TAATGCTAGTGTGGTTCTCGTAAAGACCATCTG 1972 28 100.0 33 ............................ TGGATTGAGCTGTACAAATCTGGTAAGCATTCT 1911 28 100.0 33 ............................ CAAGATAACGTTAATCGACTACTGGGACAAATG 1850 28 100.0 33 ............................ TGCCGATTTGCAAACGATCGAGCGGTTCTCCAA 1789 28 100.0 33 ............................ CCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTT 1728 28 100.0 33 ............................ TCAAAGCCCACATTAACAAGGTTGCCATGACGA 1667 28 100.0 33 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGG 1606 28 100.0 33 ............................ TTGCGCCCATGTCTTTGCAAGTTTTGTCATAGC 1545 28 100.0 33 ............................ TGGTTGTTGACCAGCCTGTGCTTGGCTTAGTGA 1484 28 100.0 33 ............................ TAAGATTGTGACGTCCGGCAGTATTTATGATCT 1423 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 1362 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 1301 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 1240 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 1179 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 1118 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 1057 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 996 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 935 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 874 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 813 28 96.4 33 .................C.......... TTTATTAGAACTAGCTGAAGATGGAACAAATGA 752 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 691 28 100.0 33 ............................ AACTCGGGGGAAATATAATCGTCACTGGCGTCA 630 28 100.0 33 ............................ CAATCAATTCGCCAACCGTTAATTCGCCATTCA 569 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 508 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 447 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 386 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 325 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 264 28 100.0 33 ............................ CAAGCGAGAGAGGGCGAAACAGTGGCAAGAACG 203 28 100.0 33 ............................ CTAGGGGGTTAGATAATGCGAGCAATAAGCGTA 142 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 79 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CTTTATGAGTATCAGCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35386-32939 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFW01000043.1 Lacticaseibacillus paracasei strain FAM19317 FAM19317_scaffold_0043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35385 36 100.0 30 .................................... AATCAAAAGTTGTATAGGAATGACGGTCAG 35319 36 100.0 30 .................................... AAACACTTATGGCAACCCTGTAGAATATGT 35253 36 100.0 30 .................................... TCTTGTCTTTGCGATCAGCTTGAACACTCA 35187 36 100.0 30 .................................... AAAAACTACCATTTTTAATAAGGTAGTCTT 35121 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGTCGGCTGT 35055 36 100.0 30 .................................... CATCGCATTGGCTGAACAAATGGCTGGAAT 34989 36 100.0 30 .................................... TCCAGCCCGTGAAGTCGCCCGATAAATTCT 34923 36 100.0 30 .................................... CCTAGTGGGTTTTCTAACTTGAATGCCTAG 34857 36 100.0 30 .................................... TGCAGAATTTAACGCCTACGTTAAATCACT 34791 36 100.0 30 .................................... GGCCAAGGGGGAAATGAAAGCCAGCATTAT 34725 36 100.0 30 .................................... CACCTTTGTAACGCTCGCCGCTAGGCGTCC 34659 36 100.0 30 .................................... TGCAAACCGGCCGTGGCCGGTGAAGCCATT 34593 36 100.0 30 .................................... GCGAGGTCAACGACAGCCTCCGCAGCAGTT 34527 36 100.0 30 .................................... CATTAGGCGTAAAATGGATTGCTGAAACGG 34461 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 34395 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 34329 36 100.0 30 .................................... GGGTCACACTTACACCGAGTTTCATGATGT 34263 36 100.0 30 .................................... AACCACTCGCGTTTTTTCGCCGTTTCCATA 34197 36 100.0 30 .................................... CCTTGCAAGTCTTTTCAGATGGCGCCTATG 34131 36 100.0 30 .................................... CAACAAAGTTGTATGGTGAAGGCGTTCACA 34065 36 100.0 30 .................................... ATGGTTGCATTAAACTGGAGGTGTTTCACG 33999 36 100.0 30 .................................... AATTATGGAAACTAATGTGAAGCATACAAC 33933 36 100.0 30 .................................... AGTCGGCAGCGGCAGCAAAGTCATTGATTG 33867 36 100.0 30 .................................... TTTTTCCGGCGCGGCGCGTTGCCTTATGGC 33801 36 100.0 30 .................................... TCTTCTCATAGGCACTCGCGATAATTGTGT 33735 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 33669 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 33603 36 100.0 30 .................................... ATCTATATGGACTGAACGGAGCACCTTTCA 33537 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 33471 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 33405 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 33339 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 33273 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 33207 36 97.2 30 ..........................A......... ATTTGAGTAACCAGACTCAGATGTGCTTAT 33141 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 33075 36 97.2 0 ...................C................ - Deletion [33040] 33039 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 32974 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 98.8 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //